Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01921 ATGTCTGCGTCCTCACTCTCCTTCCTTCATTCTTGTTCCTCTTCCTTGTTCACAATTTCAAAGCCAAATCCCAAGTCCTTTTTCTCACCATCTTTTGTGGTTGAAGCCAAAACCAGGACCCGAACGGAAGACAGGACTGCACGCCATACCCGTATCAGAAAGAAGGTTGAAGGGACACCTGAAAGACCAAGATTGTCTGTATACCGATCCAACAAGCATCTCTCTGTCCAGGTGATAGATGACACCAAGATGCAAACACTTGCTTCAGCTTCAACAATGCAGAAGACAATTGCTGAAGAGTTCAACTACACCTCTGGCCCTACAATTGAAGTAGCAAAGAGGGTGGGTGAGATCATTGCAAAATCCTGTCTGGAGAAAGGGATCACAAAGGTGGCCTTTGACCGAGGTGGATTCCCATACCATGGCCGTGTTCAAGCACTTGCTGATGCAGCTCGTGAAAATGGCTTGGAGTTCTAA 477 0.4675 MSASSLSFLHSCSSSLFTISKPNPKSFFSPSFVVEAKTRTRTEDRTARHTRIRKKVEGTPERPRLSVYRSNKHLSVQVIDDTKMQTLASASTMQKTIAEEFNYTSGPTIEVAKRVGEIIAKSCLEKGITKVAFDRGGFPYHGRVQALADAARENGLEF* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01921 158 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 35 158 IPR005484 GO:0003735|GO:0005840|GO:0006412
Rops11g01921 158 NCBIfam 50S ribosomal protein L18 41 158 IPR004389 GO:0003735|GO:0005840|GO:0006412
Rops11g01921 158 Gene3D - 40 158 - -
Rops11g01921 158 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 40 158 IPR005484 GO:0003735|GO:0005840|GO:0006412
Rops11g01921 158 CDD Ribosomal_L18_L5e 52 156 - -
Rops11g01921 158 SUPERFAMILY Translational machinery components 41 156 - -
Rops11g01921 158 Hamap 50S ribosomal protein L18 [rplR]. 40 158 IPR004389 GO:0003735|GO:0005840|GO:0006412
Rops11g01921 158 FunFam 50S ribosomal protein L18 39 158 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01921 K02881 - gmx:100306308 243.432