Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01840 ATGGCGCGGTTGTCGTTGGTGTGGTGCACGGTGGCGGTTCTGCTCTTGGCGGTGGCCGGAGGGACGAGGCTCGAGGACTGGAACGCAATCCGAATGGTGTCGGACGAGGTCGGAGATGTGGAGGCTGAGGTGGCGCAGGTGATAGGGCAGGTACGGCATGCGCTGTCGTTTGCCAGGTTCGCTCGCAGGTTCGGGAAGAAGTACGAGAGTGCGGAGGAGATGAAGCAGAGGTTCCAGATCTTCTCCCAAAACCTCAGGTTCATCCGTTCCACCAACAAGAAACGCTTGTCATACACTCTTGCTGTTAATCGTTTTGCTGATTGGACTTGGGAAGAGTTCAAAAGACACAGACTAGGTGCTGCCCAAAATTGCTCTGCCACCCGTGAGGGCAACCATAAGCTTACCGATGCTGTTCTTCCTCTGACGAAAGACTGGAGAAAAGAAGGTATAGTCAGCCCAGTTAAAGATCAAGCCCACTGCGGATCGTGCTGGACATTCAGCACAACCGGAGCTTTAGAAGCAGCTTATGCACAGGCATTTGGAAAGAATATCTCTCTTTCTGAGCAACAGCTAGTGGATTGTGCTGGTCGTTTCAATAACTTTGGCTGTAATGGTGGGTTGCCATCCCAAGCCTTTGAGTACATCAAATACAATGGTGGACTTGAGACAGAGGAAGCATATCCCTACACAGGAGAAGATGGTGTCTGCAAATTCTCAGCTGAAAATGTTGCTGTTAAAGTCTTTGACTCTGTTAATATCACCTTGGGTGCTGAGGATGAATTAAAACATGCAGTTGCTCTTGTTAGGCCTGTTAGTGTGGCATTTGAGGTGGTGAGTGGTTTCCGATTCTACAAGAAGGGAGTTTATACTAGTGACACTTGTGGTAGCACTTCCCAGGATGTGAACCATGCTGTTCTTGCTGTTGGGTATGGAGTTGAAGATGGAGTCCCATATTGGCTCATTAAAAATTCATGGGGAGATAACTGGGGTGACAATGGTTACTTCAAGATGGAATTGGGGAAGAACATGTGTGGTATTGCAACTTGTGCATCTTATCCTATCGTGGCCTAA 1071 0.4874 MARLSLVWCTVAVLLLAVAGGTRLEDWNAIRMVSDEVGDVEAEVAQVIGQVRHALSFARFARRFGKKYESAEEMKQRFQIFSQNLRFIRSTNKKRLSYTLAVNRFADWTWEEFKRHRLGAAQNCSATREGNHKLTDAVLPLTKDWRKEGIVSPVKDQAHCGSCWTFSTTGALEAAYAQAFGKNISLSEQQLVDCAGRFNNFGCNGGLPSQAFEYIKYNGGLETEEAYPYTGEDGVCKFSAENVAVKVFDSVNITLGAEDELKHAVALVRPVSVAFEVVSGFRFYKKGVYTSDTCGSTSQDVNHAVLAVGYGVEDGVPYWLIKNSWGDNWGDNGYFKMELGKNMCGIATCASYPIVA* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01840 356 Gene3D Cysteine proteinases 48 355 - -
Rops11g01840 356 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 318 337 IPR025661 -
Rops11g01840 356 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 56 348 IPR013128 GO:0008234
Rops11g01840 356 CDD Peptidase_C1A 140 353 IPR039417 -
Rops11g01840 356 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 157 168 IPR000169 -
Rops11g01840 356 Pfam Cathepsin propeptide inhibitor domain (I29) 57 113 IPR013201 -
Rops11g01840 356 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 301 311 IPR025660 -
Rops11g01840 356 FunFam Cysteine proteinase 2, putative 50 355 - -
Rops11g01840 356 SUPERFAMILY Cysteine proteinases 51 354 IPR038765 -
Rops11g01840 356 SMART Inhibitor_I29_2 57 113 IPR013201 -
Rops11g01840 356 SMART pept_c1 139 354 IPR000668 GO:0006508|GO:0008234
Rops11g01840 356 PRINTS Papain cysteine protease (C1) family signature 318 324 IPR000668 GO:0006508|GO:0008234
Rops11g01840 356 PRINTS Papain cysteine protease (C1) family signature 303 313 IPR000668 GO:0006508|GO:0008234
Rops11g01840 356 PRINTS Papain cysteine protease (C1) family signature 157 172 IPR000668 GO:0006508|GO:0008234
Rops11g01840 356 Pfam Papain family cysteine protease 140 354 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01840 Rops-Chr11 29681792 29685562 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01840 K01366 - gmx:547734 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01840 11 29681792 29685562 Rops11g01840 11 29681792 29685562 ECH