Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01829 ATGAAGATGTTTCTAACTATCTTCTTCATTTTTTCTCTTTTTTCCTTCTCCCATGCTTCTGTAGTAGATTTCTGTGTTGCTGATTACACAGCTCCTAATGGCCCTGCTGGATATTCTTGCAAGAAGCCTGCAAAGGTCACTGCAGATGACTTTGTTTACTCTGGCCTTGGCATGGCTGGTAACACCTCAAATATCATCAAAGCTGCAGTGTCACCAGCATTTGATGCTCAATTTCCTGGTGTCAATGGCCTTGGTGTTTCCATTGCTCGTTTAGACTTAGCAGTGGGTGGAGTTATTCCACTTCATACACATCCTGGTGCTTCAGAAATACTAGTGGTTGTGCAAGGGACAATCTGTGCTGGATTTGTTGCATCTGATAACACTGTTTACCTTAAATCTCTCAAAAAGGGAGATGTTATGGTATTCCCACAAGGCTTATTGCATTTTCAAGTAAATGGTGGTGGTTCAACTGCCCTTGCATTTGTAAGCTTTGGTAGTGCCAATCCTGGTCTCCAAATCCTGGACTTTGCTTTGTTCAAAAGTAATTTCCCCACTGAATTGATAACTGCAACCACTTTCCTTGATGCTGCTCAAGTGAAGAAGCTTAAGGGTGTTCTTGGAGGCAGTGGTTAA 633 0.4234 MKMFLTIFFIFSLFSFSHASVVDFCVADYTAPNGPAGYSCKKPAKVTADDFVYSGLGMAGNTSNIIKAAVSPAFDAQFPGVNGLGVSIARLDLAVGGVIPLHTHPGASEILVVVQGTICAGFVASDNTVYLKSLKKGDVMVFPQGLLHFQVNGGGSTALAFVSFGSANPGLQILDFALFKSNFPTELITATTFLDAAQVKKLKGVLGGSG* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01829 210 FunFam Auxin-binding protein ABP19a 18 209 - -
Rops11g01829 210 Pfam Cupin 56 200 IPR006045 -
Rops11g01829 210 SUPERFAMILY RmlC-like cupins 20 203 IPR011051 -
Rops11g01829 210 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Rops11g01829 210 PRINTS Germin signature 165 180 IPR001929 GO:0030145
Rops11g01829 210 PRINTS Germin signature 132 152 IPR001929 GO:0030145
Rops11g01829 210 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
Rops11g01829 210 Gene3D Jelly Rolls 18 209 IPR014710 -
Rops11g01829 210 CDD cupin_OxOx 18 206 IPR001929 GO:0030145
Rops11g01829 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 15 203 - -
Rops11g01829 210 SMART Cupin_1_3 54 200 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01829 Rops-Chr11 29518595 29519537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01829 1 209 Miscellaneous Gene Families AT5G20630 70.000 2.51e-104 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01829 - - gmx:100806553 336.65