Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01826 ATGGCGTCCGTGTACATACCAGTGCAGAATTCCGAGGAAGAGGTTAGGGTTGCTCTCGATCAACTTCCTAGGGATGCCTCCGACATCCTCGATATCCTCAAAGCAGAGCAAGCTCCTCTTGATCTATGGCTCATAATCGCGAGGGAGTACTTCAAGCAGGGAAAAATTGATCAATTTCGCCAGATTTTGGAGGAAGGATCCAGTCCAGAAATTGATGACTATTATGCTGACGTTAGATATGAGAGGATTGCTATCTTAAATGCCCTTGGGGCTTACTATAGCTACCTTGGGAAAATAGAGACAAAACAAAGAGAAAAGGAGGAGCATTTCATTTTGGCAACACAATATTACAATAAAGCATCACGGATTGATATGCATGAGCCCTCCACTTGGGTTGGGAAAGGTCAGCTTTTGCTAGCAAAGGGTGAAGTAGAACAGGCATCTGCTGCATTTAAGATTGTGTTAGATGGAGACCGTGATAATGTTCCTGCACTTTTGGGCCAGGCATGTGTCGAGTTCAATCGTGGACGATATTCTGATTCACTTGAGTTGTATAAGAGGACATTGCAAGTGTATCCCAATTGCCCTGCAGCTGTGAGACTTGGCATAGGTCTATGTCGCTACAAATTAGGTCAATTTGAAAAGGCTCAACAGGCATTTGAGCGTGTTTTGCAGCTAGATCCAGAAAATGTTGAGGCTCTTGTTGCACTTGCAATAATGGACTTGCGCACTAATGAAGCTGCAGGAATTAGGAAAGGAATGGTGAAAATGCAGAGGGCATTTGAGATATACCCATACTGTGCAATGGCTCTGAATTACCTTGCAAATCATTTTTTCTTCACTGGTCAACATTTTTTAGTTGAACAACTGACTGAAACTGCATTAGCTGTTACCAATCATGGTCCAACAAAGTCTCACTCTTATTACAATTTAGCACGCTCTTACCATAGCAAGGGAGACTATGACAAAGCTGGGGTGTATTACATGGCATCTGTCAAGGAAGTCAACAAACCTCATGAATTTGTGTTTCCTTATTATGGTTTGGGACAAGTACAAATAAAGTTGGGAGATTTTAGAAGCGCACTCGCAAACTTTGAAAAGGTTTTGGAGGTCTACCCAGATAATTGTGAGACATTGAAAGCGCTTGGACACATATATGTTCAACTTGGTCAGACTGACAAGGGCCAGGACTTTATTAGGAAAGCTACAAAAGTTGATCCCCGTGATGCCCAGGCATTTCTTGAACTGGGAGAGTTGTTAATTCAGTCTGACACAGGAGCTGCACTGGATGCATTCAAAACCGCTCGTACTCTTTTTAAGAAGGGAGGTCAAGAAGTACCAATTGAGTTACTCAATAATATTGGTGTCCTTCAGTTTGAAAGGGGAGAATTTGAGCTTGCTAAACAAACTTTTAAGGAGGCTCTAGGTGATGGAATTTGGCATTCTTTCATTACCGAACATAAGTCTTCCATTGATGTTGCTACTTCTACTCTTCAATTCAAGGACATGCAATTATTTCATGACCTTGAAAGTAACGGTCACCATGTGGAAGTACCATGGGATAAAGTCACAGTACTCTTTAACCTGGCCAGATTACTTGAGCAATTAAATGAATCTGGAACTGCAAGCATATTATATCGCCTAATCTTGTTCAAGTACCCAGACTATATTGATGCATATCTGAGGCTAGCTGCTATCGCAAAAGCTCGGAACAACATTCTGTTAAGCATTGAACTGGTTAATGATGCCCTGAAGGTGAATGACAAGTGTCCAAATGCATTATCTATGCTTGGTGAGTTGGAGTTGAAAAATGATGATTGGGTGAAGGCGAAAGAAACTCTCCGTGCAGCTAGTGATGCCACCGATGGGAAGGACTCATATGCTACTCTTTCTCTAGGAAACTGGAACTACTTTGCAGCTGTTCGCAATGAAAAGAGAAATCCAAAGCTAGAAGCTACTCATTTGGAAAAGGCCAAGGAACTTTATACAAGAGTTCTGATTCAGCATTCTGCTAATTTATATGCTGCCAATGGTGCTGGGGTAGTTTTAGCAGAAAAAGGACATTTTGATGTTTCAAAGGACATCTTTACACAGGTTCAAGAAGCTGCCAGCGGTAGTGTTTTTGTCCAGATGCCTGATGTTTGGATAAATCTGGCGCACGTTTATTTTGCTCAGGGAAATTTTTCTTTGGCGGTAAAAATGTATCAGAATTGCTTGCGGAAGTTTTATTATAACACGGACTCACAAATACATCTATATTTAGCTCGTACCCATTATGAAGCCGAACAGTGGCAAGACTGTATAAAAACTCTACTGAGAGCCATCCATTTGACACCCTCAAACTACACATTAAGGTTTGATGCAGGGGTTTCAATGCAAAAGTTTTCAGCATCAACGCTACAGAAGGCAAAGAGGACTGCAGATGAGGTGAGAGCAACTGTTGCAGAGCTGCAAAATGCTGTTCGTATATTTAGTCAGTTGTCTGCTGCATCCAACCTTCATATTCATGGATTTGATGAGAAGAAAATTGACACTCATGTTGGATACTGCACCCACTTACTTTCTGCTGCAAAAGTTCATCTTGAAGCAGCTGAGCATGAGGAGCAGCAAGTACGACAGAGACAAGAACTTGCTCGTCAGGTTGCATTGGCTGAGGAAGCCCGGCGAAAGGCTGAAGAGCAAAGGAAATTTCAGATGGAAAGGAGAAAGCAAGAGGATGAGCTAAAGCGAGTGCAACAGCAGGAGGAACAATTTAAGCGTGTTAAGGAGCAATGGAAGAGCAGCACACATTCAAAACGAAAGGAAAGGTCGGATGATGAAGAGGGTGGAACTGGCGAGAAGAAGAGAAGAAAAGGGGGAAAGAGGAGAAAGAAAGATAAGCCCTCAAAATCTCGCTATGACACAGAGGAAACAGAAGGTGATATGATGGATGAACAGGAAATGGATGATGAAGATGCTGAAATGAACTACAGAGAGGAGCCCCATACTATGATGAATGATGATGTTGAGGAAAATGCTCAGGGTCTTCTTGCAGCAGCTGGACTTGAAGATTCTGATGCAGATGACGAAACGGCTGCACCTTCCTCAACCATAGGCCGACGGAGGCAGGCATTATCAGAATCTGATGATGATGAACCATTGCAGAGGCAATCAAGTCCTATAAGAGAAAATTCTGCTGATATGCAGGAGAGTGATGGAGAAATCAGGGATGGAGATAAGACAAATGGAGATGATGCCAGTGATGATGAGAAGCAATATTGA 3261 0.4241 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFRQILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSDSLELYKRTLQVYPNCPAAVRLGIGLCRYKLGQFEKAQQAFERVLQLDPENVEALVALAIMDLRTNEAAGIRKGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFRSALANFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKVDPRDAQAFLELGELLIQSDTGAALDAFKTARTLFKKGGQEVPIELLNNIGVLQFERGEFELAKQTFKEALGDGIWHSFITEHKSSIDVATSTLQFKDMQLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLNESGTASILYRLILFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNDKCPNALSMLGELELKNDDWVKAKETLRAASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELYTRVLIQHSANLYAANGAGVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFSLAVKMYQNCLRKFYYNTDSQIHLYLARTHYEAEQWQDCIKTLLRAIHLTPSNYTLRFDAGVSMQKFSASTLQKAKRTADEVRATVAELQNAVRIFSQLSAASNLHIHGFDEKKIDTHVGYCTHLLSAAKVHLEAAEHEEQQVRQRQELARQVALAEEARRKAEEQRKFQMERRKQEDELKRVQQQEEQFKRVKEQWKSSTHSKRKERSDDEEGGTGEKKRRKGGKRRKKDKPSKSRYDTEETEGDMMDEQEMDDEDAEMNYREEPHTMMNDDVEENAQGLLAAAGLEDSDADDETAAPSSTIGRRRQALSESDDDEPLQRQSSPIRENSADMQESDGEIRDGDKTNGDDASDDEKQY* 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01826 1086 Pfam Tetratricopeptide repeat 354 412 - -
Rops11g01826 1086 Coils Coil 854 924 - -
Rops11g01826 1086 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 1 1082 IPR031101 GO:0006355|GO:0016570
Rops11g01826 1086 MobiDBLite consensus disorder prediction 1036 1050 - -
Rops11g01826 1086 Gene3D Tetratricopeptide repeat domain 7 333 IPR011990 GO:0005515
Rops11g01826 1086 Gene3D Tetratricopeptide repeat domain 334 501 IPR011990 GO:0005515
Rops11g01826 1086 ProSiteProfiles TPR repeat region circular profile. 197 230 - -
Rops11g01826 1086 Gene3D Tetratricopeptide repeat domain 509 645 IPR011990 GO:0005515
Rops11g01826 1086 FunFam protein CTR9 homolog 9 336 - -
Rops11g01826 1086 FunFam Rna polymerase-associated protein ctr9 650 834 - -
Rops11g01826 1086 MobiDBLite consensus disorder prediction 894 1086 - -
Rops11g01826 1086 SUPERFAMILY HCP-like 203 435 - -
Rops11g01826 1086 Pfam Tetratricopeptide repeat 306 333 IPR019734 GO:0005515
Rops11g01826 1086 MobiDBLite consensus disorder prediction 971 987 - -
Rops11g01826 1086 SUPERFAMILY TPR-like 652 827 IPR011990 GO:0005515
Rops11g01826 1086 ProSiteProfiles TPR repeat region circular profile. 342 375 - -
Rops11g01826 1086 ProSiteProfiles TPR repeat profile. 376 409 IPR019734 GO:0005515
Rops11g01826 1086 Coils Coil 800 820 - -
Rops11g01826 1086 MobiDBLite consensus disorder prediction 894 948 - -
Rops11g01826 1086 MobiDBLite consensus disorder prediction 1060 1086 - -
Rops11g01826 1086 SUPERFAMILY TPR-like 115 246 IPR011990 GO:0005515
Rops11g01826 1086 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Rops11g01826 1086 FunFam Protein CTR9 homolog 338 479 - -
Rops11g01826 1086 Pfam Tetratricopeptide repeat 134 194 - -
Rops11g01826 1086 Pfam Tetratricopeptide repeat 717 779 - -
Rops11g01826 1086 FunFam protein CTR9 homolog 506 649 - -
Rops11g01826 1086 Pfam Tetratricopeptide repeat 200 230 IPR001440 GO:0005515
Rops11g01826 1086 SUPERFAMILY TPR-like 449 702 IPR011990 GO:0005515
Rops11g01826 1086 ProSiteProfiles TPR repeat profile. 712 745 IPR019734 GO:0005515
Rops11g01826 1086 Gene3D Tetratricopeptide repeat domain 648 835 IPR011990 GO:0005515
Rops11g01826 1086 ProSiteProfiles TPR repeat profile. 342 375 IPR019734 GO:0005515
Rops11g01826 1086 SMART tpr_5 557 590 IPR019734 GO:0005515
Rops11g01826 1086 SMART tpr_5 197 230 IPR019734 GO:0005515
Rops11g01826 1086 SMART tpr_5 376 409 IPR019734 GO:0005515
Rops11g01826 1086 SMART tpr_5 591 624 IPR019734 GO:0005515
Rops11g01826 1086 SMART tpr_5 128 161 IPR019734 GO:0005515
Rops11g01826 1086 SMART tpr_5 342 375 IPR019734 GO:0005515
Rops11g01826 1086 SMART tpr_5 523 556 IPR019734 GO:0005515
Rops11g01826 1086 SMART tpr_5 712 745 IPR019734 GO:0005515
Rops11g01826 1086 SMART tpr_5 748 781 IPR019734 GO:0005515
Rops11g01826 1086 SMART tpr_5 162 195 IPR019734 GO:0005515
Rops11g01826 1086 SMART tpr_5 305 338 IPR019734 GO:0005515
Rops11g01826 1086 SMART tpr_5 448 483 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01826 K15176 - gmx:100794371 1951.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01826 11 29416531 29445191 Rops11g01826 11 29416531 29445191 ECH