Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01774 ATGGAGACATCTCCTTCGCAGCAAGGCGTGGTGAAGAAGAAGGAGACAAGGGGTAGAAAACCGAAACCAAAGGACGACAAGAAAGAGGAACAACAACATGGGAAAACCATGAAAGAAGGAAGAAAAACACAACAGCAGCAACAGCAACAACAACAACAACAACAACAACAACAACCTTCGGTGGACGAGAAATACACACAATGGAAGTCCCTTGTCCCTGTTCTCTATGACTGGCTTGCTAACCACAACCTCGTTTGGCCTTCTCTCTCTTGCCGGTGGGGCCCTCAGCTGGAACAAGCTACTTACAAGAATCGCCAGCGTCTCTACCTTTCTGAGCAGACCGATGGTAGTGTCCCAAATACTCTGGTGATTGCGAATTGTGAGGTTGTGAAGCCCAGGGTTGCTGCAGCAGAGCACATTTCACAGTTTAATGAAGAGGCACGCTCCCCATTTGTGAAGAAGTACAAGACCATAATACATCCCGGCGAGGTGAACAGAATTAGGGAATTGCCACAAAATTCTAAGATAGTGGCTACTCATACAGACAGCCCTGATGTGCTCATTTGGGATGTTGAAAATCAACCTAACCGTCATGCTGTCCTCGGAGCTACAAACTCTCGTCCTGATTTGATATTGACTGGACACCAAGATAATGCAGAATTTGCTCTTGCAATGTGCCCAACTGAGCCCTATGTGCTTTCAGGAGGAAAGGACAGAACGGTGGTGTTGTGGAGTATTGAAGACCATATAACATCTGCTAGCACAGACACCAAATCTGGTGGGTCAATTATCAAACCAAACTCCAAATCTGGGGAAGGCAATGATAAAACTGCTGATGGCCCTTCTGTTGGACCACGAGGTATATACTCTGGGCATGAGGATACTGTTGAAGATGTGACTTTTTGCCCTTCTAGTGCACAGGAATTCTGTAGCGTTGGAGATGATTCTTGTCTCATATTATGGGATGCACGTGTTGGCTCTAGTCCTGTGGTTAAGGTTGAAAAAGCTCATAATGCTGATCTTCACTGTGTTGACTGGAATCCCCATGATAATAATCTGATTCTTACTGGATCGGCTGATAATTCTGTTCGTATGTTTGATCGCCGCAATCTCACCTCTAATGGAGTTGGGTCACCTATTCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCAGAAGATGGTCTCTTGAACATCTGGGACTATGAAAAGGTTGGTAAAAAAATAGAGCGATCCGGAAAACCAATTAATTCTCCTCCAGGGTTGTTTTTCCAACATGCAGGTCATAGAGACAAAGTAGTTGACTTCCACTGGAATGCATCTGATCCATGGACGATTGTTAGTGTGTCTGATGACTGTGAAAGTACTGGTGGAGGGGGAACATTGCAGATATGGCGCATGAGCGATTTGATCTACAGACCAGAGGATGAGGTTTTGGCAGAGCTGGAGAAATTCAAAGCTCATGTGGTGGCATGTGCTTCAAAGTCTGAAAAGTAA 1542 0.4501 METSPSQQGVVKKKETRGRKPKPKDDKKEEQQHGKTMKEGRKTQQQQQQQQQQQQQQQPSVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVENQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDRTVVLWSIEDHITSASTDTKSGGSIIKPNSKSGEGNDKTADGPSVGPRGIYSGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDNNLILTGSADNSVRMFDRRNLTSNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKPINSPPGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKAHVVACASKSEK* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01774 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 254 IPR001680 GO:0005515
Rops11g01774 513 MobiDBLite consensus disorder prediction 254 275 - -
Rops11g01774 513 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 63 129 IPR022052 -
Rops11g01774 513 MobiDBLite consensus disorder prediction 254 290 - -
Rops11g01774 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 383 418 IPR001680 GO:0005515
Rops11g01774 513 Gene3D - 37 499 IPR015943 GO:0005515
Rops11g01774 513 MobiDBLite consensus disorder prediction 1 61 - -
Rops11g01774 513 SUPERFAMILY WD40 repeat-like 150 482 IPR036322 GO:0005515
Rops11g01774 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 367 IPR001680 GO:0005515
Rops11g01774 513 SMART WD40_4 434 481 IPR001680 GO:0005515
Rops11g01774 513 SMART WD40_4 327 367 IPR001680 GO:0005515
Rops11g01774 513 SMART WD40_4 282 322 IPR001680 GO:0005515
Rops11g01774 513 SMART WD40_4 376 416 IPR001680 GO:0005515
Rops11g01774 513 SMART WD40_4 205 245 IPR001680 GO:0005515
Rops11g01774 513 SMART WD40_4 151 190 IPR001680 GO:0005515
Rops11g01774 513 MobiDBLite consensus disorder prediction 19 40 - -
Rops11g01774 513 MobiDBLite consensus disorder prediction 41 61 - -
Rops11g01774 513 Pfam WD domain, G-beta repeat 287 322 IPR001680 GO:0005515
Rops11g01774 513 Pfam WD domain, G-beta repeat 335 367 IPR001680 GO:0005515
Rops11g01774 513 Pfam WD domain, G-beta repeat 210 245 IPR001680 GO:0005515
Rops11g01774 513 Pfam WD domain, G-beta repeat 377 416 IPR001680 GO:0005515
Rops11g01774 513 PANTHER WD40 REPEAT FAMILY 53 496 - -
Rops11g01774 513 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 334 367 - -
Rops11g01774 513 FunFam WD-40 repeat-containing protein MSI4 37 499 - -
Rops11g01774 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 289 331 IPR001680 GO:0005515
Rops11g01774 513 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 383 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01774 Rops-Chr11 28449436 28455443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01774 285 476 Miscellaneous Gene Families AT5G08390 25.871 5.15e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01774 K10752 - gmx:100779302 962.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01774 11 28449436 28455443 Rops11g01774 11 28449436 28455443 ECH