LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g01754	ATGGCCCAGGCTATAGTGACCTTCATAGTGCAAAGTCTTGGTAATTTGCTCATTCAAGAAGCAGTGTTCTTATATGGGGTGGAAGACAAAGTGCAGCAGCTACAAACTGAATTGAGGATGATGCAATCTTACTTGCAAGATGCAGATAGAAGACAAGATGAAAATGAAAGCCTCCGCAATTGGATTTCAGAAATCAGAGAAGCTGCTTATGATTCTGATGATGTCATTGAGGCACATGCCCTCAGAGGAGCCTCAAGAAGAAACTTGACTGGTATCCTGAACCTCATTAAAAGGTATGCTCTAATCACCAAAAGGTTAATAGAAATCCATCATGTGGGATCTCAGGTTGATGTTATCATAACTAGGATATCTAGCCTCACAAGGAGTCTGCATACTTATGGCATAAAACCTCAAACAGGAGAAGCCTCAAATTCTGTGCATGGGAGGCAGAGATATTTGAGGAGATCTTACTCTCATATTATTGAAGAGGACATAATTGGTGTGGAGGATGATGTAAAGATTTTGGAGTCATGTTTGGTCAACCCCAATAAAGGCTACAAAGTAGTTGCCATTTGTGGGATGGGGGGTTTAGGGAAGACAACATTGGCAAAGAAGGTATACCATAGTCCTGATGTTAGGCACTATTTTGAGAGTTTTGCTTGGGCTTACATATCACAGCATTGCCAAGCAAGGGATGTGTGGGAAGGAATTCTGTTTAAGCTGATTTCTCCTACTAAAGAGTTAAGAGAGGAAATTGTCAATATGAGAGATGAGGAGCTTGCAAGGACGCTTTACGAAGTTCAAGTGGAGAAGAAATGTTTAGTAGTCCTTGATGATATTTGGAGTGCAGGTACCTGGAACAATCTGAGTCCTGCATTCCCAACTGGGAGATCACTATCAGTAGTTGGTAGCAAAATAATGCTAACTAGTCGAAACATTGATGTTGCATTACATATGGATCCTAATAGTTATCTTCATAAACCAAGATGTTTAAATGAAGATGACAGCTGGGAGTTGTTCCAAAAGAAGGCATTTCCAAAAAATGATGATCCAGACTTCAAAATTAGCATAGAGATGGAGAAGTTGGGAAGGGAAATGGTTGGAAGATGTGCAGGTTTACCATTGGCCATCATTGTGCTTGGAGGACTGTTAGCATCAAAGCCTACATTTTATGAATGGGACACTGTGCGTCAGAACATCAATTCATACTTGAGGAGAGCAAAAGGCGATGAACAACTCTTAGGAGTATCTGAGGTGCTAGCTTTGAGCTATTATGAATTGCCATACCAGTTGAAGCCATGCTTCTTACATTTAGCCCATTTCCCAGAAAATTTAGAGATACCAACAAAGAAATTAATAAGAATATGGGTGGCAGAGGGTATCATATCATTGGTTCAGAATGAAGGAGAAGGTGAAGAAGCTCTAGAGGATGTGGCACAACGTTACTTGACTGAGCTAGTGGAGAGGTGTATGATTCAGGTAGTTGAAAAGAGTTCAACAGGAAGAATCAGAACTTGCCAGATGCACAACCTCATGAGGGACCTATGTGCATCCAAGGCATCTCAGGAAAACTTTCTTGAGGTGATTAATTCCTGGAATGTGGATGAACCAAGGGCCTTAAGAGCAAGGCCAATTGGTAAAGTTCGCAGGATTGCCTTATATCTGGATCAAGATATTGATAGGTTCTTCCCTTCAAATTTAAGAGGCCACCACCATCTCAGGTCTCTCCTTTGCTACCATGAAAAGACAGCTAGGCTGAGTGAATGGGGGTTGATGAAGTCAGTTTTCAAAAAATGCAAGTCACTTAGAGTCTTAAACTTGGAAGGAATTCAGGGTCATGTAGGGAAGTTACCAAAAGAAATTGGTTACTTGATCCACCTAAGGTTTCTCAGTCTAAGAAATACAAAAATTGATGAGTTGCCCCCATCAATAGGGAATTTGAAGTGCTTGCAGACCCTTGATCTTCTAACAGGAAATTCAACTGTACAAATACCAAATGTAATAGGGAACATGGACAGATTGAGACATTTATATCTACCAGAGTCTTGTGGTGATGGCACTGAAAAATGGCAACTTGCCAATCTGAAAAGCTTGCAGACTTTGGTTAACTTCCCTGCAGAGAAGTGTGATGTAAGAGATCTTATGGAATTAACCAATTTAAGAAAATTGGTGATAGATGATCCAAAATATGGAGATATCTTCAAGAATCCTAATGTGACATTTAACCATCTTGAGTCACTATTTTTTGTTAGTTCTGAGGATATATCAGTTATCCAAGTTGCAGCAGGATGTCCCAATCTTCACAAGCTGCACATAGAAGGGCCTATATCGAATTTTCCAGAACCCCACCAAATCTCTTCCAAGCTAGCAAAGCTAAAGTTGCAGGGTTCTGGACTTCTTGTAGATCCAATGACAACATTAGAGAAGCTGCCCAATTTAAGGTTGCTTGAGTTACAACTTGATTCATTCATGGGAAAGCAACTAGTGTGTTCTAGTAGAGGTTTCCCTCAGCTCAAGTCTTTGCTTCTCTCTGACTTGACCCCTCTTGAAGAGTGGAAAATGGAAAAAGGAGCCATGCCTAGTCTTTGCAAACTTGAGATTTCAAATTGCACTAAGCTTGAGATGGTTCCAGATGGGCTAAGATTTGTCACCACTCTTCAAGAATTGGAGATCAGATCAATGTTTGCAGCATTCAGAACTAAACTTGAAAAAGGAGGAGAGGATCATTACAAAGTCCAACATGTGCCAACAGTAGTATTTCGTTATTGTGACTATTAA	2778	0.4039	MAQAIVTFIVQSLGNLLIQEAVFLYGVEDKVQQLQTELRMMQSYLQDADRRQDENESLRNWISEIREAAYDSDDVIEAHALRGASRRNLTGILNLIKRYALITKRLIEIHHVGSQVDVIITRISSLTRSLHTYGIKPQTGEASNSVHGRQRYLRRSYSHIIEEDIIGVEDDVKILESCLVNPNKGYKVVAICGMGGLGKTTLAKKVYHSPDVRHYFESFAWAYISQHCQARDVWEGILFKLISPTKELREEIVNMRDEELARTLYEVQVEKKCLVVLDDIWSAGTWNNLSPAFPTGRSLSVVGSKIMLTSRNIDVALHMDPNSYLHKPRCLNEDDSWELFQKKAFPKNDDPDFKISIEMEKLGREMVGRCAGLPLAIIVLGGLLASKPTFYEWDTVRQNINSYLRRAKGDEQLLGVSEVLALSYYELPYQLKPCFLHLAHFPENLEIPTKKLIRIWVAEGIISLVQNEGEGEEALEDVAQRYLTELVERCMIQVVEKSSTGRIRTCQMHNLMRDLCASKASQENFLEVINSWNVDEPRALRARPIGKVRRIALYLDQDIDRFFPSNLRGHHHLRSLLCYHEKTARLSEWGLMKSVFKKCKSLRVLNLEGIQGHVGKLPKEIGYLIHLRFLSLRNTKIDELPPSIGNLKCLQTLDLLTGNSTVQIPNVIGNMDRLRHLYLPESCGDGTEKWQLANLKSLQTLVNFPAEKCDVRDLMELTNLRKLVIDDPKYGDIFKNPNVTFNHLESLFFVSSEDISVIQVAAGCPNLHKLHIEGPISNFPEPHQISSKLAKLKLQGSGLLVDPMTTLEKLPNLRLLELQLDSFMGKQLVCSSRGFPQLKSLLLSDLTPLEEWKMEKGAMPSLCKLEISNCTKLEMVPDGLRFVTTLQELEIRSMFAAFRTKLEKGGEDHYKVQHVPTVVFRYCDY*	926

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops11g01754	925	Pfam	NB-ARC domain	170	424	IPR002182	GO:0043531
	Rops11g01754	925	CDD	RX-CC_like	2	128	IPR038005	-
	Rops11g01754	925	FunFam	Probable disease resistance protein At1g63360	424	518	-	-
	Rops11g01754	925	Pfam	Rx N-terminal domain	5	87	IPR041118	-
	Rops11g01754	925	Gene3D	-	5	113	-	-
	Rops11g01754	925	FunFam	Probable disease resistance protein At1g61300	148	323	-	-
	Rops11g01754	925	PRINTS	Disease resistance protein signature	370	384	-	-
	Rops11g01754	925	PRINTS	Disease resistance protein signature	857	873	-	-
	Rops11g01754	925	PRINTS	Disease resistance protein signature	188	203	-	-
	Rops11g01754	925	PRINTS	Disease resistance protein signature	267	281	-	-
	Rops11g01754	925	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	148	438	IPR027417	-
	Rops11g01754	925	Gene3D	-	423	520	IPR036388	-
	Rops11g01754	925	SUPERFAMILY	L domain-like	507	893	-	-
	Rops11g01754	925	Coils	Coil	31	51	-	-
	Rops11g01754	925	Gene3D	Ribonuclease Inhibitor	541	905	IPR032675	-
	Rops11g01754	925	Gene3D	-	155	324	IPR027417	-
	Rops11g01754	925	Gene3D	-	330	422	IPR042197	-
	Rops11g01754	925	PANTHER	DISEASE RESISTANCE PROTEIN RP	31	871	IPR044974	GO:0006952
	Rops11g01754	925	FunFam	Probable disease resistance protein At5g66910	330	423	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops11g01754	Rops-Chr11	28142404	28146476	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops11g01754	614	889	Receptor kinase-like Gene Family	AT5G65700	28.179	5.50e-10	61.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g01754	-		-	gmx:100305356	1444.87