Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01718 ATGGCATTTGTATCTGAACCTTTGCATCTTCTTCTCTTGTTAGCTTTCTCAATGTGCTGTTTGTCATCAATTAGCACCACTTATACAACCACCACCACATCTTTAGGAAGCTCACCAGCAACTTTAACTTCTAAACCTCAAAAATTGGTCTCCAAACTCATTCACCATCGCTCTATTCTCCATCCACACTATAATCCTAATGAAACAGCCAAAGACCAAATGGAACTTGATATCCAACACTCGCTTGCACGTTTAGCCTACATGAAAGCAAGGATAGAAGGTTCTTTGGTCTCTGATGACTACAGGGCTAACCTTTATCCCTCTTTAGCTGGTCGAACCATATTGGTCAACATCTCAATAGGCCAACCCCCCATCCCACAACTAGTTATCATGGACACAGCCAGTGACATCTTCTGGATTATGTGCACCCCTTGTTTAAATTGTGACCACCATTCACTTGCAGTTTTTGACCCTTCAAAGTCTTCCACCTATTCACCATCATGTAGAACACCCTGTGGCTTCAGTGGCTGCAAATGTGACCTCTTGGATCAGTTGACATTCAAAATCACTTATGCTGACAGTTCCTTCTCATCAGGGACCCTTGGCCGTGACATGCTAGTTTTTGAGACAGCTGATGAAGGTACCACTAAGGTGCCCAATATAGAATTTGGATGTGGTCACAACATAGGGTACAATACTGACCCAGGGTACAATGGGATACTAGGACTAAACCACGGACGTGAGTCTTTGGCATCACAAATTGGTCTAAAATTCTCTTACTGCATAGGCAGTCTAACTGACAAATATTATACGTACAACCAATTGATACTGGGTGAAGGGGCAGATCTTGAAGGCTATTCCACAAGTTTTCAAGTGCATCATGGCTTTTACTATATCACCATGGAAGGCATAAGTATAGCAGAAAATAGGCTTGACATAGATCCAGCAACTTTTGAGTTTAAAGAGAATGGCACAGGTGGAGTCATCATTGACACAGGGAGCACACTCACCTACCTAGTTGATGATGTGTATAAATTACTATGCAAAGAAGTTATAAATATCCTTCATGGGTCGTTTAGAGTAGCTGTAATTGAAAATAGTCCATGGCTACTTTGCTACTTGGGGACTGTGAGTAGAGACCTGGTTGGGTTTCCAGTGGTTACGTTCCATTTTGGTGAAGGGGCAGATTTGGTTTTGGACTCTGGAAGCCTTTTTGAACAAGTGAGTGATAATGTATTTTGCATGGCTGTTGGTCCAATCAGTGAAAGTGGCATTGACAGTGGTAATCTTTCAATTATTGGGTTATTAGCCCAGCAGAGTTACAATGTTGGGTATGACCTCATAAATCGCTTTATTTTCTTCCAAAGAATTGACTGTGAACTTCTCAGTGGCTGA 1395 0.4186 MAFVSEPLHLLLLLAFSMCCLSSISTTYTTTTTSLGSSPATLTSKPQKLVSKLIHHRSILHPHYNPNETAKDQMELDIQHSLARLAYMKARIEGSLVSDDYRANLYPSLAGRTILVNISIGQPPIPQLVIMDTASDIFWIMCTPCLNCDHHSLAVFDPSKSSTYSPSCRTPCGFSGCKCDLLDQLTFKITYADSSFSSGTLGRDMLVFETADEGTTKVPNIEFGCGHNIGYNTDPGYNGILGLNHGRESLASQIGLKFSYCIGSLTDKYYTYNQLILGEGADLEGYSTSFQVHHGFYYITMEGISIAENRLDIDPATFEFKENGTGGVIIDTGSTLTYLVDDVYKLLCKEVINILHGSFRVAVIENSPWLLCYLGTVSRDLVGFPVVTFHFGEGADLVLDSGSLFEQVSDNVFCMAVGPISESGIDSGNLSIIGLLAQQSYNVGYDLINRFIFFQRIDCELLSG* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01718 464 ProSiteProfiles Peptidase family A1 domain profile. 114 455 IPR033121 -
Rops11g01718 464 CDD pepsin_A_like_plant 115 459 IPR034161 -
Rops11g01718 464 PANTHER OS07G0603500 PROTEIN-RELATED 52 459 - -
Rops11g01718 464 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 328 339 IPR001969 GO:0004190|GO:0006508
Rops11g01718 464 Gene3D Acid Proteases 107 277 IPR021109 -
Rops11g01718 464 SUPERFAMILY Acid proteases 115 459 IPR021109 -
Rops11g01718 464 FunFam Aspartyl protease family protein 281 461 - -
Rops11g01718 464 Pfam Xylanase inhibitor N-terminal 115 267 IPR032861 -
Rops11g01718 464 Pfam Xylanase inhibitor C-terminal 297 455 IPR032799 -
Rops11g01718 464 Gene3D Acid Proteases 283 462 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01718 Rops-Chr11 27100950 27102344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01718 70 462 Miscellaneous Gene Families AT1G77480 25.234 1.18e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01718 - - gmx:100781790 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01718 11 27100950 27102344 Rops11g01718 11 27100950 27102344 ECH