Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01598 ATGATTGCATCACCATGTCGTCCATCTCATCATTCACAGCTCACTCATACAGCTCGCGCACGCACTCACTCACCCACCCAATCCCCTCACACTCATCGCGTCTCACTTCCACACTTCACACTTCACACTCATCTTCCTCTGCTTCTGCCACTGCTGCAGAGAAAGAAAGAAAAGAGAAAAACAAGAACAACAACATCCGAATCCAGATCCATAGATAGATACACCATTATTAAACAAACAATGCCTTCTCATTCCCATCCTTGCTTAATTCCCCAAATTACCCTCGCAACTTTGTTATATTTACTAGTCCTATCCCCACTCCCATCTTCTTCCGTCAACATCACCGCACTCCTTTCCACCTTCCCGGAGTTATCCCAATTCACCGCCCTCCTCTCCGCCGCCACTCCCCTCGCCGGAGACCTCTCCGGCCGAACCTCCCTCTCCCTCCTCGCCGTCCCTAACAACTTCCTCTCCTCCGATGACCACATAACCCACCACCAACTCTCCCCCTCTGCACTCGCCGACGTCCTCCGCTACCACATCCTCCTCCAATTCCTCTCAATGTCCGACCTTCGCTCCCTCCCTCCCTCCGGCAAACTCATCACCACTCTCCTCCAAACCACCGGCCGCGCCACCGATAACTTCGGCTCCGTCAACATTACCCATGACCCTCGAAACGGCGTCGTTTCGATCCGTTCCCCTGCACCTTATTCCCCTTCAAACGCAACCGTTCTTTCCGTCATCAAAACCCTACCTTACAACGTCACTATCTTCTCCGTTAATTCCCTCCTTATCCCTTATGGTTTCGATCTCATGGCTTCGGAAACTCGCCCTAGCATCGCTCTCAACATCACCAAGGCCTTAATCGACGGCCACAGCTTCAACGTCGCCGCTTCTATGCTCGCCGCCTCCGGCGTCGTTCAGGAATTCGAAGCCGATGAAGGTGGCGCCGGAATCACAATGTTCGTCCCCGTCGACGATGCCTTCGCCGATTTACCACCCTCCGTTATGCTTCAATCCCTTCCGGCGGATAAAAAAGCCGTTGTTCTCAAATTTCACGTTCTTCATTCGTATTACCCACTTGGTTCTCTTCAGTCTGTGGTTAACCCCTTGCAACCAACCCTAGCGACCGAAGCCATGGGTGCTGGAAGCTTCACTCTCAACATTTCCAGAATCAACGGCTCCGTCGCCATTAACACCGGCATCGTTCAAGCCTCCATAGCTCAAACAGTATTCGATCAGAACCCTGTTGCCATTTTCGGAGTTTCAAAGGTTTTGCTGCCACGTGAGATTTTCGGGAAGAATCCGGTTGTTTCTGCGAAGCCATCGCCGGAGGATGACGGTGCTCCTCCGCCGCAAGATGATGATGCACTTTCACCGGGATTCGGTGATGGCCAGCCGTCACACCTTTCTTCGCCGCCGGGGTTTCGACAAGATGTGCGGTCCAATGCTGCTGTTCATGGTTTCAAGTTGTTTGATGTTGTTGTTCTTTGCTGTATAGGATTGTATTTAATGCTTGCTCGATATTGTTGTCGAACCTTGATGATCATCAGTATCGGATGGATCATTTAA 1572 0.5159 MIASPCRPSHHSQLTHTARARTHSPTQSPHTHRVSLPHFTLHTHLPLLLPLLQRKKEKRKTRTTTSESRSIDRYTIIKQTMPSHSHPCLIPQITLATLLYLLVLSPLPSSSVNITALLSTFPELSQFTALLSAATPLAGDLSGRTSLSLLAVPNNFLSSDDHITHHQLSPSALADVLRYHILLQFLSMSDLRSLPPSGKLITTLLQTTGRATDNFGSVNITHDPRNGVVSIRSPAPYSPSNATVLSVIKTLPYNVTIFSVNSLLIPYGFDLMASETRPSIALNITKALIDGHSFNVAASMLAASGVVQEFEADEGGAGITMFVPVDDAFADLPPSVMLQSLPADKKAVVLKFHVLHSYYPLGSLQSVVNPLQPTLATEAMGAGSFTLNISRINGSVAINTGIVQASIAQTVFDQNPVAIFGVSKVLLPREIFGKNPVVSAKPSPEDDGAPPPQDDDALSPGFGDGQPSHLSSPPGFRQDVRSNAAVHGFKLFDVVVLCCIGLYLMLARYCCRTLMIISIGWII* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01598 523 MobiDBLite consensus disorder prediction 437 474 - -
Rops11g01598 523 Gene3D FAS1 domain 106 266 IPR036378 -
Rops11g01598 523 SMART fasc_3 320 429 IPR000782 -
Rops11g01598 523 SUPERFAMILY FAS1 domain 288 428 IPR036378 -
Rops11g01598 523 FunFam fasciclin-like arabinogalactan protein 4 111 266 - -
Rops11g01598 523 FunFam Fasciclin-like arabinogalactan protein 4 282 429 - -
Rops11g01598 523 MobiDBLite consensus disorder prediction 8 33 - -
Rops11g01598 523 Pfam Fasciclin domain 293 428 IPR000782 -
Rops11g01598 523 Gene3D FAS1 domain 281 429 IPR036378 -
Rops11g01598 523 MobiDBLite consensus disorder prediction 1 33 - -
Rops11g01598 523 ProSiteProfiles FAS1/BIgH3 domain profile. 281 426 IPR000782 -
Rops11g01598 523 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 93 479 IPR033254 -
Rops11g01598 523 SUPERFAMILY FAS1 domain 107 267 IPR036378 -
Rops11g01598 523 ProSiteProfiles FAS1/BIgH3 domain profile. 111 264 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01598 Rops-Chr11 24322451 24325533 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01598 - - gmx:100788356 641.728