Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01563 ATGAGTCAGGAATCGTTTATATATAGCTTCGTGGCTCGTGGGACGATGGTGTTAGCTGAGTTCACCGAGTTCACTGGGAACTTCCCTGCAATTGCAGCTCAGTGTCTTCAGAAACTACCCTCTTCCAACAACAAGTTCACCTACAACTGTGACCACCACACCTTCAATTTCTTGGTTGAAGATGGTTATGCTTACTGTGTTGTTGCCAAGGAATCTGTTAGCAAGCAGATCTCCATTGCTTTCCTTGAACGTGTCAAAGCTGATTTTAAAAAAAGACATGGTGGTGGAAAAGCAGATACAGCTATTGCCAAAAGTCTGAACAAGGAGTTTGGACCAGTTATGAAAGAGCACATGAAGTATATCATTGATCATGCTGAAGAGATTGAAAAACTAATAAAAGTGAAGGCCCAAGTTTCAGAAGTTAAAAGTATCATGTTAGAGAATATAGACAAGGCTATTGATAGAGGAGAAAATCTAACTATTCTTGCAGACAAGACAGAGACATTGCAGTCACAGGCTCAAGATTTCAGAAAGCGAGGAACACAAGTCCGTAGGAAGATGTGGTATCAGAACATGAAAATTAAATTGGTTGTTCTTGGAATTTTGTTGCTTTTGGTCCTTGTTATATGGCTTTCTATTTGTGGTGGATTTGACTGTACAAACTAG 666 0.3979 MSQESFIYSFVARGTMVLAEFTEFTGNFPAIAAQCLQKLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERVKADFKKRHGGGKADTAIAKSLNKEFGPVMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTILADKTETLQSQAQDFRKRGTQVRRKMWYQNMKIKLVVLGILLLLVLVIWLSICGGFDCTN* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01563 221 CDD R-SNARE 129 188 - -
Rops11g01563 221 PRINTS Synaptobrevin signature 191 210 IPR001388 GO:0016020|GO:0016192
Rops11g01563 221 PRINTS Synaptobrevin signature 135 154 IPR001388 GO:0016020|GO:0016192
Rops11g01563 221 PRINTS Synaptobrevin signature 155 174 IPR001388 GO:0016020|GO:0016192
Rops11g01563 221 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 130 190 IPR042855 -
Rops11g01563 221 SMART Longin_2 31 113 IPR010908 -
Rops11g01563 221 Gene3D Longin domain 6 116 - -
Rops11g01563 221 ProSiteProfiles Longin domain profile. 10 114 IPR010908 -
Rops11g01563 221 Pfam Regulated-SNARE-like domain 32 110 IPR010908 -
Rops11g01563 221 SUPERFAMILY SNARE-like 6 121 IPR011012 -
Rops11g01563 221 ProSitePatterns Synaptobrevin signature. 148 167 IPR001388 GO:0016020|GO:0016192
Rops11g01563 221 PANTHER SNARE PROTEINS 3 215 - -
Rops11g01563 221 Pfam Synaptobrevin 129 215 IPR042855 -
Rops11g01563 221 CDD Longin 7 120 IPR010908 -
Rops11g01563 221 Gene3D - 117 214 - -
Rops11g01563 221 FunFam Vesicle-associated membrane protein 724 1 126 - -
Rops11g01563 221 FunFam Vesicle-associated membrane protein 726 128 214 - -
Rops11g01563 221 SUPERFAMILY SNARE fusion complex 126 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01563 Rops-Chr11 23840057 23843086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01563 1 220 Miscellaneous Gene Families AT1G04760 67.273 9.82e-111 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01563 K08511 - gmx:100527252 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01563 11 23840057 23843086 Rops11g01563 11 23840057 23843086 ECH
Rops2g04872 2 88002417 88005056 Rops11g01563 11 23840057 23843086 PCT