Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01546 ATGGAACCTCACGCTTTGTATTCCTCATTGGAAATGTTGATACAGCTTATCAACACTATCATTGACCTTATTACCTCACCTCCCCATGGTTTTGCGGTGCTTTTGGTAGCAGGTCTTGCAATCCTCTACTTTGCATGCAGAAGAAAAGCATCCATCTATTTGATAGACTTTACCTGCTACTGTCCACCCAGTTCTTATAGGCTACCTAAGGCCATGTTCAAAGAGAATACTCTTTTAGAAAATATGGATCCAGAGGCCGTTGATTTCCAATGCAAGATTATAACAAAATCTGGATTCAGTGAGGAAACATCCATTCCTCCATCTCTTGCTCAGATACCCAAAATAAAAGCTCTCACCTTGGCCCTTCAGGAGGCTGAAACAATAATGTATTCAGCTATCACGGACTTGTTTCAGAAAAACAATATCAACCCAAAAGCCATCGACATACTCATCACAAACAGTAGCATCTTCTGTCCTACCCCATCTCTTAGTGCCATGGTGGTTAACAAATTCAGGATGAGGAGCAACATCATGAGCTTCCACCTATCAGGTATGGGATGTAGTGCTGGAATTATATCAGTGAGTCTGGCTAAAGACTTGTTGAGAGTTCACAGGAACTCACTGGCCTTAATAGTAAGCACAGAGACCCTGAGTCTAAATTGGTACACAGGTAAAGTTCCATCTATGTTGATAACTAATTGTTTATTCAGAATGGGTGGAGCAGCTATATTAATGTCTAGTAGGGTCCAAGATAAGCCCAAGGCAAAGTATGAGCTAAAGCATATTGTTAGAACAATCAATGCAAGGGATGATCAATCTCATGGCTGTGTCTACCAGGATGTGGATCCAGAGAACATAGAAGGTGTATCAATATCAAAGAACATAGCCAATGTGGCTGGAAATGTACTGAAGAAAAATATATCTTCACTAGGACCATTGGTTTTGCCATTGAGAGAGCAATTCCTATATGTTTTCTCCATTATTTGTCACAAACTATGGACTACAAGAAGAACTAGCATCTATACTCCAAATTTTCATGGTGCTTTTGAGCATTTCTGCATACATTCAGGGGGAAGAGCCGTTTTACAAGCCACTGAAAGAAACTTGAGGTTAAGGAAACAGGACATGGAACCATCAACTATGACTCTTTACAGGTTTGGAAATACTTCATCTTCTTCAATTTGGTATGAGCTGTGCTATATAGAAGCAAAAGGGAGGATGAAATGTGGTGATAGGGTGTGGCAAATTGCATTTGGAAGTGGATTCAAGTGTAACAGTGCAGTGTGGAAATGTCTATGTGACGTGAAGCCAACTATTACAAGTGCATGGAGGGATACCATTCACTCCTACCCTGTGGATATTGTGAGAACAAACTGA 1377 0.4052 MEPHALYSSLEMLIQLINTIIDLITSPPHGFAVLLVAGLAILYFACRRKASIYLIDFTCYCPPSSYRLPKAMFKENTLLENMDPEAVDFQCKIITKSGFSEETSIPPSLAQIPKIKALTLALQEAETIMYSAITDLFQKNNINPKAIDILITNSSIFCPTPSLSAMVVNKFRMRSNIMSFHLSGMGCSAGIISVSLAKDLLRVHRNSLALIVSTETLSLNWYTGKVPSMLITNCLFRMGGAAILMSSRVQDKPKAKYELKHIVRTINARDDQSHGCVYQDVDPENIEGVSISKNIANVAGNVLKKNISSLGPLVLPLREQFLYVFSIICHKLWTTRRTSIYTPNFHGAFEHFCIHSGGRAVLQATERNLRLRKQDMEPSTMTLYRFGNTSSSSIWYELCYIEAKGRMKCGDRVWQIAFGSGFKCNSAVWKCLCDVKPTITSAWRDTIHSYPVDIVRTN* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01546 458 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 350 430 IPR013747 -
Rops11g01546 458 SUPERFAMILY Thiolase-like 41 248 IPR016039 GO:0016746
Rops11g01546 458 SUPERFAMILY Thiolase-like 260 431 IPR016039 GO:0016746
Rops11g01546 458 PIRSF Very_long_ch_3-ktacl-CoA_syn 4 458 IPR012392 GO:0006633|GO:0016020|GO:0016747
Rops11g01546 458 PANTHER 3-KETOACYL-COA SYNTHASE 33 453 IPR012392 GO:0006633|GO:0016020|GO:0016747
Rops11g01546 458 Gene3D - 65 430 IPR016039 GO:0016746
Rops11g01546 458 Pfam FAE1/Type III polyketide synthase-like protein 46 331 IPR013601 GO:0006633|GO:0016020|GO:0016747
Rops11g01546 458 CDD CHS_like 33 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01546 Rops-Chr11 23566780 23568156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01546 10 452 Acyl Lipid Metabolism Gene Families AT1G71160 51.002 3.86e-163 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01546 K15397 - gmx:100783404 776.933