Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01545 ATGATCAAGTTGCAGAGGTTAAGACATGGAGCTAACAAGTTTTGCTCTTTGTCTGAATCATGCACCACCACTCATTGTTCCTCGCATTCTCTCTCTTCTCCTTTTCACTTCACAGCTACAGATCGTACGGTACTCCACCGCGTTTTAGAACGATGCAGAGCTTCTAAGGATTCTAGAACCGTGGCTAAAACTCATGCAAGGGTAGTTGTACTTGGGTATGCCACGTACCCATCTCTTGTTTCGTCTTTGATATCAACCTATGCACACTGTCACAAACCCCACATTGCCCATAATGTTTTTTCCCGTGTTTTGGATCTGTTCAACATGAATTTAGTGCTTGAAAGCTTAGTGAAAGCTGGGGAATGTGACGTTGCCAAGAAGGTGTTTGTTAAAATGCCTGTTAGAGATGTGGTCACGTGGAACACGATGATTGGAGGGTATGTTAAAAACTTACGCTTTCTTGATGCGTTGAGTTTTTTCCGTAAAATGCTTAGTGCCAAGGTTGAAACTGATGGGTTTACCTTTGCTTCCGTAGTTACAGCGTGTGCACGCCTCGGGGCTCTTTGCAATGCTAAGTGGGTGCATGGTTTGATGATTGAGAAAAGAGTTGAACTGAATTATATACTGAGTGCTGCATTGGTTGACATGTATGCCAAGTGTGGTAGAATTGATGTTTCAAAACAAGTTTTTGATGGGGTGGTGCGTGATCATGTGTCCATTTGGAATGCTATGATTAATGGGTTAGCAATTCACGGGCTCGCTTTGGATGCAATTGCGGTTTTTGCAAGGATGGAGGTGGAGAATGGTGTGCCGGATTCTGTTACCTTTGTTGGGATTCTGAAAGCTTGTAGCCATTGTGGATTGGTTGAGGAAGGTCGTAAGTACTTTGATATGATGCAGAATAGGTTCTTGATTCAGCCGCAACTTGAGCATTATGGAACCATGGCTGATCTCTTGGGAAGAGCAGGGCTCTTGGAAGAGGCCTATGCAATGATTAAGGCAATGCCGGTGGAACCTGATGTTGTTATATGGAGAGCACTTCTGAGTGCTTGTAGAATTCACAAAAAGAAAGAACTTGGTGAATTTGCCATTGCAAATATTTCCCGTCTTGAGAGTGGTGATTTTGTCTTGCTGTCAAATATGTATTGCTCTTTGAAGAACTGGCATAGTGCTGAGAGAGTGAGACAGATGATGAAAATGGGAGGAGTTCATAAAAAGAGTGGTAAGAGTTGGATTGAATTGGGTGACAGTGTTCACCAATTCAATGCAGCTGATCAGTCACATGCTGAAATAAAGGAAATTTACAAAGTGCTAGAAGGTTTGATCCAAAGAGCTAAGTTGGAGGGTTTTACACCCTTGACAGATCTGGTTTTGATGGATGTTTCTGAAGAGGAAAAGGAGGAAAATTTAGCATTTCATAGTGAGAAGTTGGCATTGGCTTATGGGGTTCTGAAAAGTAGCCCAGGAACAAAAATCAGGATTTCCAAAAACCTGCGTATCTGTCAAGACTGTCATGATTGGATTAAAATAGTGTCAAGAATATTAAACAGAGAGATAATTGTGAGGGATCGCATCCGTTTTCACCAATTCAATGATGGTTTTTGCTCTTGTGGAGACTACTGGTAG 1626 0.4213 MIKLQRLRHGANKFCSLSESCTTTHCSSHSLSSPFHFTATDRTVLHRVLERCRASKDSRTVAKTHARVVVLGYATYPSLVSSLISTYAHCHKPHIAHNVFSRVLDLFNMNLVLESLVKAGECDVAKKVFVKMPVRDVVTWNTMIGGYVKNLRFLDALSFFRKMLSAKVETDGFTFASVVTACARLGALCNAKWVHGLMIEKRVELNYILSAALVDMYAKCGRIDVSKQVFDGVVRDHVSIWNAMINGLAIHGLALDAIAVFARMEVENGVPDSVTFVGILKACSHCGLVEEGRKYFDMMQNRFLIQPQLEHYGTMADLLGRAGLLEEAYAMIKAMPVEPDVVIWRALLSACRIHKKKELGEFAIANISRLESGDFVLLSNMYCSLKNWHSAERVRQMMKMGGVHKKSGKSWIELGDSVHQFNAADQSHAEIKEIYKVLEGLIQRAKLEGFTPLTDLVLMDVSEEEKEENLAFHSEKLALAYGVLKSSPGTKIRISKNLRICQDCHDWIKIVSRILNREIIVRDRIRFHQFNDGFCSCGDYW* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01545 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 136 170 IPR002885 -
Rops11g01545 541 Pfam PPR repeat 274 301 IPR002885 -
Rops11g01545 541 Pfam PPR repeat 240 266 IPR002885 -
Rops11g01545 541 Pfam PPR repeat 311 335 IPR002885 -
Rops11g01545 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Rops11g01545 541 FunFam Pentatricopeptide repeat-containing protein 43 192 - -
Rops11g01545 541 Gene3D Tetratricopeptide repeat domain 237 436 IPR011990 GO:0005515
Rops11g01545 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 302 IPR002885 -
Rops11g01545 541 Pfam PPR repeat family 135 184 IPR002885 -
Rops11g01545 541 Gene3D Tetratricopeptide repeat domain 22 215 IPR011990 GO:0005515
Rops11g01545 541 Pfam DYW family of nucleic acid deaminases 449 541 IPR032867 GO:0008270
Rops11g01545 541 NCBIfam pentatricopeptide repeat 138 169 IPR002885 -
Rops11g01545 541 NCBIfam pentatricopeptide repeat 240 272 IPR002885 -
Rops11g01545 541 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 40 478 IPR046960 GO:0003723|GO:0009451
Rops11g01545 541 Pfam E motif 354 413 IPR046848 -
Rops11g01545 541 FunFam Pentatricopeptide repeat-containing protein 209 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01545 Rops-Chr11 23560263 23561888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01545 110 541 Glycoside Hydrolase AT3G49170 39.091 4.50e-107 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01545 - - gmx:100788229 874.389