Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01515 ATGTCATTTTTGAGCAGGGAATTGGTGCTCCTCATTCTTCAATTTCTAGAGGAAGAGAAATTCAAGGATACCGTGCACAAGCTGGAGCAAGAATCGGGTTTCTTCTTCAATGAGAAGTATTTTGAAGAAAAAGCCCTGGCTGGAGAGTGGGATGAGGTTGAGAAGTACCTCTCTGGCTTTACCAAAGTTGATGACAATCGATACTCCATGAAAATTTTCTTTGAGATTAGGAAGCAGAAATATCTCGAAGCCTTGGACAGGCATGACAAAGGGAGGGCTGTTGAAATTCTGGTGAATGATTTGAAAGTATTTTCAACATTTAACGAAGATTTGTACAAAGAAATAACACATCTTCTAACCCTTGACAACTTCAGGGAAAATGAACAGTTATCAAAGTATGGTGATACTAAATCAGCTCGAAACATAATGCTGGTAGAGCTTAAGAAATTGATAGAAGCAAATCCCCTCTTTCGAGATAAGCTTATTTTTCCTTCATTTAAGGCTTCACGGTTAAGAACCCTGATTAATCAAAGTTTGAATTGGCAGCATCAGCTGTGCAAGAACCCAAAGCCAAATCCTGACATCAAAACTTTATTTACTGACCATACCTGTTCACCTCCAAATGGAGCTCGCACACCTACTCCTGTCACTCTTCCTGCTGCAGCTGTTGCAAAACCTTCATCTTATGCTCCACTAGGAGCACATGGTGGTCCATTTACACCAGTCCCAGCAGCTGCTAATGTTAATGCTTTTACGGGATGGATGGTGAATGCAAATCCTTCCACATCTACTCAATCACCTGTAGTTGCTGCTTCCTCATTGTCTGGTCTTCCAAACCAAGGCCCCATTTTGAAGCATTCAATAACACCTAATGCTCTTAGAATGATGGAATATCAAAATAATGATCATGATCAACTAATGAAACGGTTGCGATCTGCACAATCCGTTGATGAGGTCACATATCCTGCTCCACCTCAACAAGCCTCTTGGTCACTTGATGACCTTCCTAGAACTGTTGTTTGTACGTTACATCAGGGATCAACAGTGACAAGCATGGATTTTAATCCTTCTCTTCATTCTTTACTTGCTGTTGGTTGTGCAAATGGTGAAATTTCACTTTGGGAAGCAGGGCTGAGAGAAAGGCTGATATCAAAACCTTTCAAAATATGGAATATTTCTGCTTGCTCTGTCTTATTTCAGGTTGCAATTGTGAAAGACTCATCTATATCCATCAATCGTGTATCATGGAGTCCAGATGGGAATTTTATTGGGATTTCTTTTACAAAACATTTGATTCATTTGTATGCCTATCAAGCACCTAATGACCTACAGCAGCATTTGGAGATTGATGCTCATGCTGGTGGTGTTAATGACTTTGCATTTTCATATCCAAGCAAACAGCTATGCATTGTAACTTGTGGAGATGATAAGTTAATAAAGGTATGGGATTTGACTGGACAGAAGCTCTTTAACTTTGAAGGTCATGGAGCACCTGTTTATTCTGTTTGTCCTCACCAGAAGGAAAAGATCCAGTTTATATTTTCAACTGCTGTTGATGGGAAAATTAAGGCCTGGTTGTATGATAACATGGGCTCCAGAGTGGACTATGATGCTCCTGGACAGTGGTGCACTGCAATGCTCTATAGCGCTGATGGAAGTAGATTGTTCTCTTGTGGGACAAGTAAAGGTGGAGATTCTTTCCTAGTCGAATGGAATGAAAGTGAAGGAGCACTAAAAAGAACATATTCTGGGTTTAGAAGGAAATCTGCTGGCATTGTGCAATTTGATACAGCAAAGAGTCGCTTTTTGGCTGCTGGTGAAGATAACCAGATTAAGTTTTGGGACATGGATAATATCAATGTTCTGGCCAGTACAGATGCTGAGGGTGGTCTTCCTAGTCTCCCTCGCTTGAGGTTCAATAAGGAAGGAAATCTGCTTGCTGTTACTACAGCAGATGGTGGTTTGAAAATCCTTGCTAATGCTGATGGCATCAAATACTTAAGGGCCATTGAAGCTCGGTCTTATGAAGCATCTAAAGCATCTTTTGAGACAAAGGTACCTGGACCTTCTGTGGTTGCAAATATCAATCCACTCATCAATAAAGTAGAACACGTGGACAGAAGCTCTCCTGCTGCACCGGCACCTATCCCTAATGGAGTTGATTCTATGGCTAGAAGCATAGAGAAGAAAAGAAGTTTGGATGATGTATCTGACAAATCTAAAGCCTGGGAATCGACAGAAATAGTTGATCCTGTTCAGTGTCGATCAGTTACTATGCCAGAAAGTATGGGTCCCTCTAGCAAGGTTGCTCGTCTTCTTTATACAAATTCTGGGGCTGGTCTTCTGGCTCTTGGTTCAAAAGGGATTCAGAAGCTGTGGAAATGGAGCCGTAATGAACTGAATCCTAGTGGAAAGGCCACAGCAAGTGTTGTTCCTCAACATTGGCAACCAAGTAGTGGTCTTCTAATGACTAATGATGTCCCAGACAATTCTGAAGCAGCTGTTCCCTGCATTGCACTCTCAAAGAATGATTCCTATGTTATGTCTGCATGTGGAGGAAAAATTTCACTGTTCAACATGATGACATTTAAGGTAATGGCAACTTTTACACCACCTCCCCCTACTTCAACCTTCCTCGCATTTCACCCTCAAGATAATAACATCATTGCAATTGGAATGGAAGATTCAACGATTCATATTTACAATGTCAGGGTAGATGAGGTCAAATCTAAATTGAAGGGTCACCAGAAGCACATTACTGGTTTAGCTTTTTCTGCTAAACTGAATATCTTGGTTTCATCTGGTGCTGATGCTCAGATTTTCCTTTGGAGCATTGACTCATGGGATAAGAAGAAATCACTATCAATCCAAATGGCAGTTGGAAATGCACCTGTTGGTGATACTAGAGTGCAATTCCACATTGATCAAGTAAACCTGCTGGTCTGCCATGAGACGCAGCTAGCAATATATGATGCTTCAAAAATGGAAGTGATTCGGCAGTGGGTGCCACAAGATGGGTTGTCTGGTTCCATATCCTCTGCAACATATTCCTGCAATAGCCAACTAGTTTATGCTGCTTTCACTGATGGAAATATTGGAGTATTTGATGCTGACAGCTTGAGACTAAGATGTCGTATAGCTTCATCTGCATACCTTCATCAGACCTCATCAAACAGCCAAAATGTATACCCTGTTGTTGTTACAGCACATCCACAGCAGCCCAATCAATTTGCAGTGGGACTGTCAGATGGGTCTATTAAGGTTATAGAGCCCACAGAGTCTGAAGGGAGATGGGGAATTAAAGAACCTGTTGATAATGGTAGGACAGCTTCACCCTCAATCACAAATAACTCACACTCCTGA 3363 0.4139 MSFLSRELVLLILQFLEEEKFKDTVHKLEQESGFFFNEKYFEEKALAGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDKGRAVEILVNDLKVFSTFNEDLYKEITHLLTLDNFRENEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLIFPSFKASRLRTLINQSLNWQHQLCKNPKPNPDIKTLFTDHTCSPPNGARTPTPVTLPAAAVAKPSSYAPLGAHGGPFTPVPAAANVNAFTGWMVNANPSTSTQSPVVAASSLSGLPNQGPILKHSITPNALRMMEYQNNDHDQLMKRLRSAQSVDEVTYPAPPQQASWSLDDLPRTVVCTLHQGSTVTSMDFNPSLHSLLAVGCANGEISLWEAGLRERLISKPFKIWNISACSVLFQVAIVKDSSISINRVSWSPDGNFIGISFTKHLIHLYAYQAPNDLQQHLEIDAHAGGVNDFAFSYPSKQLCIVTCGDDKLIKVWDLTGQKLFNFEGHGAPVYSVCPHQKEKIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGQWCTAMLYSADGSRLFSCGTSKGGDSFLVEWNESEGALKRTYSGFRRKSAGIVQFDTAKSRFLAAGEDNQIKFWDMDNINVLASTDAEGGLPSLPRLRFNKEGNLLAVTTADGGLKILANADGIKYLRAIEARSYEASKASFETKVPGPSVVANINPLINKVEHVDRSSPAAPAPIPNGVDSMARSIEKKRSLDDVSDKSKAWESTEIVDPVQCRSVTMPESMGPSSKVARLLYTNSGAGLLALGSKGIQKLWKWSRNELNPSGKATASVVPQHWQPSSGLLMTNDVPDNSEAAVPCIALSKNDSYVMSACGGKISLFNMMTFKVMATFTPPPPTSTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKHITGLAFSAKLNILVSSGADAQIFLWSIDSWDKKKSLSIQMAVGNAPVGDTRVQFHIDQVNLLVCHETQLAIYDASKMEVIRQWVPQDGLSGSISSATYSCNSQLVYAAFTDGNIGVFDADSLRLRCRIASSAYLHQTSSNSQNVYPVVVTAHPQQPNQFAVGLSDGSIKVIEPTESEGRWGIKEPVDNGRTASPSITNNSHS* 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01515 1120 Gene3D - 283 534 IPR015943 GO:0005515
Rops11g01515 1120 FunFam TOPLESS-related 3 403 696 - -
Rops11g01515 1120 SUPERFAMILY WD40 repeat-like 564 795 IPR036322 GO:0005515
Rops11g01515 1120 SMART ctlh 34 92 IPR006595 -
Rops11g01515 1120 Gene3D - 962 1111 IPR015943 GO:0005515
Rops11g01515 1120 ProSitePatterns Trp-Asp (WD) repeats signature. 470 484 IPR019775 -
Rops11g01515 1120 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 484 IPR001680 GO:0005515
Rops11g01515 1120 Pfam LisH-like dimerisation domain 5 33 - -
Rops11g01515 1120 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1111 IPR027728 GO:0006355
Rops11g01515 1120 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 470 1095 IPR011047 -
Rops11g01515 1120 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Rops11g01515 1120 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 624 IPR001680 GO:0005515
Rops11g01515 1120 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 947 - -
Rops11g01515 1120 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Rops11g01515 1120 Gene3D - 535 686 IPR015943 GO:0005515
Rops11g01515 1120 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 953 IPR001680 GO:0005515
Rops11g01515 1120 Pfam WD domain, G-beta repeat 911 944 IPR001680 GO:0005515
Rops11g01515 1120 Pfam WD domain, G-beta repeat 444 483 IPR001680 GO:0005515
Rops11g01515 1120 SUPERFAMILY WD40 repeat-like 330 526 IPR036322 GO:0005515
Rops11g01515 1120 SMART WD40_4 397 436 IPR001680 GO:0005515
Rops11g01515 1120 SMART WD40_4 575 615 IPR001680 GO:0005515
Rops11g01515 1120 SMART WD40_4 818 859 IPR001680 GO:0005515
Rops11g01515 1120 SMART WD40_4 994 1036 IPR001680 GO:0005515
Rops11g01515 1120 SMART WD40_4 1048 1090 IPR001680 GO:0005515
Rops11g01515 1120 SMART WD40_4 485 526 IPR001680 GO:0005515
Rops11g01515 1120 SMART WD40_4 862 902 IPR001680 GO:0005515
Rops11g01515 1120 SMART WD40_4 529 572 IPR001680 GO:0005515
Rops11g01515 1120 SMART WD40_4 442 483 IPR001680 GO:0005515
Rops11g01515 1120 SMART WD40_4 336 375 IPR001680 GO:0005515
Rops11g01515 1120 SMART WD40_4 905 944 IPR001680 GO:0005515
Rops11g01515 1120 Gene3D - 729 961 IPR015943 GO:0005515
Rops11g01515 1120 SMART Lish 4 36 IPR006594 GO:0005515
Rops11g01515 1120 MobiDBLite consensus disorder prediction 1097 1120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01515 Rops-Chr11 22759390 22769058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01515 448 657 Miscellaneous Gene Families AT5G08390 23.697 3.24e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01515 - - tpra:123882083 1799.25