Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01510 ATGGCTGCCCTGACATTCACTGAGGAGTTCACTAGCACTGTCCAGGCTGGGAGGATGTTCAAGGCTTTGATCCTTGATGCTCCAAACCTCATCCCCAAGCTGATGCCTCAGGTTATTAAGAATATTCAACTTGTTGAAGGCAATGGAGGCCCCGGAAGCATTCAAGAGATAACCATTGTTGAAGCAGATGCTCACATCAAACACTTGAAGAATAGGATTGATGCAATAGACAAAGAGAATTTGACATATAGCTATGCAGTGATTGAGGGGGATGTACTGAAAATTGTTGAATCAGCTTCACATGAGATAAAGATTGAGCCCAGTAAAAACGGGGGTTGCAAGGTAAAGACTGTTAGCAATTATCATCCCAAACCAGGGGTTGAGATCAAAGAGGAGGATTTCAAGGGTGCCAGGGAGGAATCTTTGGCTATCCCCAAGGTAGTGGATGCCTATCTTGAGGCAAATCCAGAGGCCTATGCTTGA 483 0.4493 MAALTFTEEFTSTVQAGRMFKALILDAPNLIPKLMPQVIKNIQLVEGNGGPGSIQEITIVEADAHIKHLKNRIDAIDKENLTYSYAVIEGDVLKIVESASHEIKIEPSKNGGCKVKTVSNYHPKPGVEIKEEDFKGAREESLAIPKVVDAYLEANPEAYA* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01510 160 CDD Bet_v1-like 5 152 - -
Rops11g01510 160 SMART Bet_v_1_2 5 155 IPR000916 GO:0006952
Rops11g01510 160 Coils Coil 59 79 - -
Rops11g01510 160 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Rops11g01510 160 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Rops11g01510 160 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Rops11g01510 160 PRINTS Major pollen allergen Bet V1 signature 67 86 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Rops11g01510 160 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Rops11g01510 160 PRINTS Major pollen allergen Bet V1 signature 86 99 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Rops11g01510 160 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Rops11g01510 160 Gene3D - 3 158 IPR023393 -
Rops11g01510 160 FunFam Major pollen allergen Bet v 1-A 1 159 - -
Rops11g01510 160 PANTHER - 1 159 - -
Rops11g01510 160 Pfam Pathogenesis-related protein Bet v 1 family 3 124 IPR000916 GO:0006952
Rops11g01510 160 SUPERFAMILY Bet v1-like 4 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01510 Rops-Chr11 22723455 22724299 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01510 - - pvu:PHAVU_009G252400g 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01510 11 22723455 22724299 Rops11g01510 11 22723455 22724299 ECH