Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01489 ATGGCTCATTGCAAAGGCAAGAAAGGTTTTTTAGCTTTTGGGTTAGTTCTTTGTTTAATGGTTTTGATAGGGATTGGGGAAGGGAGGGTGCCCTTTGCATGTGACCCTAAGAATGGGTTAACAAGAGGGTTCAAGTTTTGTAGGACAAACGTGCCCGTACATGTGAGGGTACAAGACCTTATAGGGAGGCTTACATTGGCTGAGAAGATAAGGTTGGTGGTGAACAATGCCATTGAGGTCCCAAGGCTTGGTATCCAAGGATATGAATGGTGGTCAGAGGCGTTGCACGGTGTTTCAAATGTGGGGCCCGGTACCAAGTTTGGTGGGACCTTCCCCGCCGCCACTAGCTTCCCTCAAGTCATCACCACCGCTGCTTCTTTCAATCAGTCACTTTGGCAAGAAATTGGACGGGTTGTGTCTGATGAAGCAAGAGCAATGTACAATGGTGGGGTAGCGGGCTTGACATATTGGAGTCCTAATGTGAACATTTTCCGTGACCCCAGGTGGGGCCGTGGCCAAGAAACTCCCGGCGAGGACCCAACCTTGGCCGGAAAATACGCCACCAGCTATGTCCGGGGACTCCAAGGTGACGGCGCCGGTAACCGGCTCAAGGTTGCTGCTTGTTGCAAACACTACACTGCCTATGATCTTGATAATTGGAATGGCGTAGACAGGTTTCATTTCAACGCCAGGGTTAGTAAGCAAGACTTGGCAGATACGTATAATGTTCCGTTCAAAGCGTGCGTGTTGGAAGGGAAGGTGGCGAGTGTGATGTGTTCCTATAATCAGGTGAATGGCAAGCCCACATGTGCTGATCCTGAACTACTTCGCAACACAATCCGTGGTCAATGGCGCCTCAATGGGTACATAGTCTCGGATTGTGACTCTGTTGGGGTTCTTTATGACAACCAACACTTCACAAAAACACCAGAAGAGGCAGCTGCTGAAGCCATCAAAGCAGGCCTGGATTTGGATTGTGGGCCATTCTTGGCCCTCCACACTGATGGAGCCATTAGGAAAGGGCTTCTTTCTGAAAACGATCTTAACCTTGCATTGGCCAATCTTATCACGGTCCAAATGAGATTGGGCATGTTCGATGGTGAACCATCGGCCCAACCCTATGGTAACTTGGGCCCAAGAGATGTTTGCACCCCGGCCCATCAACAACTGGCCCTTGAGGCAGCAAGACAGGGTATTGTTCTGTTACAAAACAAAGGAAACTCCTTGCCTTTATCCCCTACGCGACACCGCACCGTAGGAGTCATTGGACCCAATTCAGATGTAACTGTTACAATGATAGGAAACTATGCGGGTGTGGCATGTGGTTATACGACGCCGTTGCAAGGTATTTCGAGATATGTGAAGACTGTACATCAAGCGGGGTGTAGGGACGTGGCTTGTGGTGGGACCCAACTGTTTGGAGCGGCAGAGACGGTGGCCAGGCAGGTTGATGCGACTGTGTTAGTAATAGGCCTGGACCAGTCCATAGAAGCTGAATTCAGAGACAGGGTTGGGCTTCTTTTACCGGGCCATCAGCAAGAGCTTGTGTCTAGAGTTGCCAGGGCCGCTAGAGGCCCAGTTATCTTGGTCCTCATGTCTGGTGGCCCAATTGATGTCTCATTTGCCAAAAATGATCCCAAGATTAGTGCCATTTTGTGGGTTGGTTATCCTGGCCAAGCTGGGGGAACTGCCATTGCTGATGTTATCTTTGGCACAACTAACCCAGGGGGAAGGCTACCTATGACATGGTACCCACAATCCTATCTGGCTAAATTGCCCATGACAAACATGGATATGCGTCCAAACCCAGCAACTGGGTACCCAGGAAGAACCTACAGATTCTACAAGGGTCCAGTAGTATTCCCATTTGGGCATGGGCTAAGTTACACTAGATTCACCCACAGCTTAGTACTTGCTCCCAAACAAGTCTCAGTGCCATTTGCAAGCCTCAAAGCCTTCACAAACTCAACAACAGTGTCAAACAAAGCAATGAGGGTGAGTCATGCCAATTGTGGTGCATTGGAAGTTGGGTTCCATGTTGATGTGAAAAATGAAGGCTCAATGGATGGGACTAACACCCTTCTCATTTTCTCAAAGCCACCACCTGGTAAATGGAATGCAGTCAAACAGTTGGTGAGTTTCCACAAGACTTATGTTCCTGCTGGCTCAAAGCAGCGTGTTAAGGTTGGTGTTCATGTCTGCAAGCACCTATCCGTTGTGGACGAGTTTGGGATTCGAAGAATCCCAATGGGTGAACATGAACTCCATATTGGTGATATCAAACATTCAATTTCTGTCCAAACTCTGGAAGAATTCAAGCATTAG 2325 0.4882 MAHCKGKKGFLAFGLVLCLMVLIGIGEGRVPFACDPKNGLTRGFKFCRTNVPVHVRVQDLIGRLTLAEKIRLVVNNAIEVPRLGIQGYEWWSEALHGVSNVGPGTKFGGTFPAATSFPQVITTAASFNQSLWQEIGRVVSDEARAMYNGGVAGLTYWSPNVNIFRDPRWGRGQETPGEDPTLAGKYATSYVRGLQGDGAGNRLKVAACCKHYTAYDLDNWNGVDRFHFNARVSKQDLADTYNVPFKACVLEGKVASVMCSYNQVNGKPTCADPELLRNTIRGQWRLNGYIVSDCDSVGVLYDNQHFTKTPEEAAAEAIKAGLDLDCGPFLALHTDGAIRKGLLSENDLNLALANLITVQMRLGMFDGEPSAQPYGNLGPRDVCTPAHQQLALEAARQGIVLLQNKGNSLPLSPTRHRTVGVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYVKTVHQAGCRDVACGGTQLFGAAETVARQVDATVLVIGLDQSIEAEFRDRVGLLLPGHQQELVSRVARAARGPVILVLMSGGPIDVSFAKNDPKISAILWVGYPGQAGGTAIADVIFGTTNPGGRLPMTWYPQSYLAKLPMTNMDMRPNPATGYPGRTYRFYKGPVVFPFGHGLSYTRFTHSLVLAPKQVSVPFASLKAFTNSTTVSNKAMRVSHANCGALEVGFHVDVKNEGSMDGTNTLLIFSKPPPGKWNAVKQLVSFHKTYVPAGSKQRVKVGVHVCKHLSVVDEFGIRRIPMGEHELHIGDIKHSISVQTLEEFKH* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01489 774 PANTHER SUGAR HYDROLASE-RELATED 29 764 IPR044993 GO:0009044|GO:0045493
Rops11g01489 774 SUPERFAMILY (Trans)glycosidases 45 398 IPR017853 -
Rops11g01489 774 FunFam probable beta-D-xylosidase 2 384 630 - -
Rops11g01489 774 Gene3D - 56 373 IPR036962 GO:0004553|GO:0005975
Rops11g01489 774 Pfam Glycosyl hydrolase family 3 C-terminal domain 399 629 IPR002772 GO:0004553|GO:0005975
Rops11g01489 774 Pfam Fibronectin type III-like domain 699 759 IPR026891 -
Rops11g01489 774 Gene3D - 385 630 IPR036881 GO:0004553|GO:0005975
Rops11g01489 774 Gene3D Immunoglobulins 652 774 IPR013783 -
Rops11g01489 774 PRINTS Glycosyl hydrolase family 3 signature 279 297 IPR001764 GO:0004553|GO:0005975
Rops11g01489 774 PRINTS Glycosyl hydrolase family 3 signature 205 221 IPR001764 GO:0004553|GO:0005975
Rops11g01489 774 PRINTS Glycosyl hydrolase family 3 signature 117 136 IPR001764 GO:0004553|GO:0005975
Rops11g01489 774 FunFam probable beta-D-xylosidase 7 56 371 - -
Rops11g01489 774 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 399 632 IPR036881 GO:0004553|GO:0005975
Rops11g01489 774 SMART Fn3_like_2 692 761 IPR026891 -
Rops11g01489 774 Pfam Glycosyl hydrolase family 3 N terminal domain 111 325 IPR001764 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01489 Rops-Chr11 22475108 22481171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01489 15 767 Glycoside Hydrolase AT5G49360 73.289 0.0 1146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01489 - - gmx:100812823 1367.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01489 11 22475108 22481171 Rops11g01489 11 22475108 22481171 ECH