Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01487 ATGGATCCCAAATGGGTTGTTTTTCTGTTGAGTATTGCAACAATGTTAGTGATTGGGAATGGACAATCAGCAGTGAAGCCATTGGTGAAGACAGTGAAGGGAAAGAAGCTATGTGACAAAGGGTGGGAATGCAAAGGATGGTCTATTTATTGTTGCAATGAGACTATTTCTGACTACTTCCAAACCTACCAGTTTGAGAACCTCTTCTCAAAACGTAATGCACCAGTTGCACATGCTGTTGGATTCTGGGACTACCGTTCTTTTATCACTGCTGCAGCACTGTACCAGCCACTTGGGTTTGGCACCACTGGAGGAAAGCTTGGTGGGCAGAAAGAGCTTGCAGCTTTCCTTGGTCATGTGGGCAGCAAGACCTCTTGTGGTTATGGGGTGGCTACTGGGGGACCCTTTGCCTGGGGCTTATGCTACAATAAGGAATTGAGTCCTGATAAATTCTACTGTGATGACTACTACAAATTGACCTATCCTTGCACTCCTGGCGCTGCATACTATGGCCGTGGTGCCCTGCCAATTTACTGGAACTACAACTATGGAAAAACTGGGGAAGCCTTGAAGGTGAACCTATTGGACCATCCAGAATACATAGAACAGAATGCTACCTTGGCCTTTCAGGCAGCATTATGGAAGTGGATGACCCCACCTGAGAAACACATACCTTCAGCCCATGATGTGTTTGTTGGCAACTGGAAACCCACAAAAAATGACACATTATCCAAAAGGGTTCCTGGGTTTGGTGCCACCATCAATATACTATATGGTGATCAAGTGTGTGGCCAGGGATCTGATAATGAGGCCATGAACAACATCGTTTCCCACTATCTCTATTACCTTGATCTCATGGGGATTGGTAGAGAAGAGGCAGGGCCTAATGAAGTGCTCTCTTGTGCTGAGCAAGCTGCTTTTAAACCCTCTGGCTCACCATCTTCTGCAACAAATTGA 957 0.4598 MDPKWVVFLLSIATMLVIGNGQSAVKPLVKTVKGKKLCDKGWECKGWSIYCCNETISDYFQTYQFENLFSKRNAPVAHAVGFWDYRSFITAAALYQPLGFGTTGGKLGGQKELAAFLGHVGSKTSCGYGVATGGPFAWGLCYNKELSPDKFYCDDYYKLTYPCTPGAAYYGRGALPIYWNYNYGKTGEALKVNLLDHPEYIEQNATLAFQAALWKWMTPPEKHIPSAHDVFVGNWKPTKNDTLSKRVPGFGATINILYGDQVCGQGSDNEAMNNIVSHYLYYLDLMGIGREEAGPNEVLSCAEQAAFKPSGSPSSATN* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01487 318 Pfam Chitinase class I 64 291 IPR000726 GO:0004568|GO:0006032|GO:0016998
Rops11g01487 318 FunFam Endochitinase (Chitinase) 143 203 - -
Rops11g01487 318 CDD chitinase_GH19 64 301 - -
Rops11g01487 318 Gene3D Endochitinase, domain 2 144 203 - -
Rops11g01487 318 SUPERFAMILY Lysozyme-like 56 307 IPR023346 -
Rops11g01487 318 PANTHER CHITINASE-RELATED 9 304 - -
Rops11g01487 318 PIRSF Endochitinase 3 308 IPR016283 GO:0004568|GO:0005975
Rops11g01487 318 Gene3D - 64 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01487 Rops-Chr11 22433052 22435011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01487 23 307 Glycoside Hydrolase AT3G16920 82.807 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01487 - - gmx:100809617 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01487 11 22433052 22435011 Rops11g01487 11 22433052 22435011 ECH