Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01411 ATGTTCTTCAGCGGCGATCCCTCTAGTCGGAAGCGTGTTGATTTAGGTGGTCGCAGCTCGAAGGAAAGGGACAGAAAGAATCTTCTAGAACAGACGCGATTGGAGCGGAATCGGCGCTTGTGGTTGCGCCAGCAGAACTCTGCTGCACTCACGATTCAGAAATGCTTCAGAGGGAGAAAAGTTGTCAGAACTGAACAGTCTAAGCTGCGAGAGAAATTTCTTAGAATCTATGGGAAGAACTGCCAGAATTTAGACAGGAATGCTTTTGGTCCAGATTCTGATTTCCTCCGTCAGTTCCTCTATTTCTTTAATGCAGAAAATATTGATGATTTTATGGTTCTTGTGCAAATTTGCCGATTGCTTCAACAGTTTGTTCAAGAGAGTGCAGGGGATGTGGTGAGACTTTTTGCTGGTGTGGATTACTCATCCAAATGTGCTTTGGTGAACTACCGAGTGAAGCAACTTGTATATACTTGTATTCGTGCTGTACATCAGAATAGAAATCAGTTGAAGGATCAACTTTTATTGACTCCGAAGGAATTTAATGCATCAGCTGTTCCTTTATTTGAAGTTTTAGTATTGTTGATAGATCCCAAACTGCCATGGAGCTGTAAGATAGTAGGATATCTCTCTCAAAAGAATGCATTCGGCCTACTCAGAGAAATTATTCTTAAAGGAAAGGATAATGTGGAAAATTGTATTTACAGTGAAAAAGGATCATCCTTGGAGCGTGTGCTTTCAGTTGTAATATGTCACATTGGTCAGAAGCCATGTATCTGTTCATATATTGATCCAAGATATAGCTTCTCATCTCAGATCCTTACAATTCCTTTCTTGTGGCATGTTTTTCCAAACTTAAGACAGGATTTTGCAAAACAGGGCCTGATCCAACATTACATTCATCAAGTGGCAACATTTGTGCCCAATCTGATTAGTTTTCTACCTAAGGATATATCAGATGAATTCCCTACCTATGCCTGTCTTCTTGGAAATATATTAGAAACTGGTGGAATTGCTTTGTCTCAACCTGACTGTTCGTTTGATATGGCCATGGACCTTGCAGCTGTTACTACATTTTTACTGGATGCGCACCCATTTCTAACAAGATCTGATGGTAGAGAAAATTCTATGATTGCTGAGGATGATAACACTGGCAATGATGAAGTCATGGAAGTAGCTTTGGATAGGAAATTGCATCAACAAATTTCTAATGCTGTAGATACTCGCTTCCTTCTGCAACTGACAAATATATTATTTAGAGATATTTCATCTGCCTATGGTTCAGATTATGGGCCAGATGATAGGGAGGTTGCAGCTGTTAGTGCAGTTTGTGGGTTTTTATATGTTATCGTCAACACATTGCCACTTGAAAGGATTATGACTGTGCTTGCCTACAGAACTGAACTTGTTCCCATGCTTTGGAATTTTATGAAGCGTTGCCATGAGAATAAAAAATGGTCATCTTTGTCCGAGCGGTTATCATACCTCTCAGGTGATGCCTCTGGTTGGCTGTTACCTCTGGCTGTATTCTGTCCTGTCTACAAGCATGTGCTTATGATAGTTGATAATGAGGAATATTATGAGCAGGAGAAGCCGCTATCACTGAAGGATATTAGGAGCCTCATCATTCTTTTGAGGCAGGCTTTGTGGCAGCTACTGTGGGTGAATCATACATCATCTGCTAATTCAGTGAAATCTGTTCCAGTTAGCACAACTACTAAAAGGCTGCTGTCTGTTGAAGCCATTGAACAGAGAGTTAGCATAGTAGTCTCTGAGCTCCTATCTCAGCTGCAAGATTGGAACAACAGAAAACAGTTCACATCCCCTAGTGATTTCCATGCTGATGGGGTGAATGACTTCTTCATCTCTCAGGCTGTTATAGAAAATGCACGAGCAAATGAAATTTTGAAGCAGGCTGCATTTTTGATACCATTTACAAGCAGGGCTAAAATATTCACTTCTCAACTAGCTGCCGCTAGGCAAAGACATGGATCTCAGGCTGTATTTACTAGAAACCGGTTCAGAATAAGACGAGATCATATTTTGGAAGATGCTTATAATCAAATGAGTCAGTTGTCAGAGGACGATCTTCGAGGATTGATTCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAGGCTGGAATAGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGCGCCGCCTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCGGATCATCTGCTTTATCCTAATCCTGGATCAGGAATGATACATGAACAACATCTCCAATTTTTCCACTTTCTTGGTACACTTCTTGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATTTACCATTTGCTACATTCTTTTTGAGCAAATTGAAACAGAAGCACAACTATTTGAATGACTTGCCATCCTTGGACCCGGAACTTTATCGTCATCTTATCTTTCTAAAGCATTATGAGGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAACAATGAATACGGAGAGCAAACAGAAGAGGAGCTGCTTCCAGGGGGAAAGAACCTACGTGTCACTAATGAGAATGTCATCACATTTATCCATCTAGTAGCCAATCATCGCTTGAATTTTCAGATACGTCAACAAAGTTCTCATTTCCTGAGAGGATTTCAGCAACTTATTCAGAAGGATTGGATCGATATGTTTAATGAGCATGAACTTCAGCTTCTGATATCAGGTTCACTTGACAGCTTGGATGTTGATGATTTGCGGCTGCACACGAACTATACAGGAGGCTATCATAGTGAGCATTATGTGATTGAGATGTTCTGGGAAGTTCTCAAAGGCTTTTCATTGGAAAACAAGAAGAAATTTTTAAAGTTTGTGACAGGTTGCTCTCGGGGGCCATTGCTTGGATTCCGATATCTTGAACCTTTGTTTTGCATACAAAGGGCCGGTGGTAATGCTTCTGAGGAAGCTCTTGACCGATTACCAACATCAGCCACTTGTATGAATCTACTAAAGCTTCCACCTTATAGAAGCAAGGATCAAATGGAAACCAAATTACTGTATGCTATAAATGCTGATGCTGGCTTTGATTTGAGTTAA 3105 0.4035 MFFSGDPSSRKRVDLGGRSSKERDRKNLLEQTRLERNRRLWLRQQNSAALTIQKCFRGRKVVRTEQSKLREKFLRIYGKNCQNLDRNAFGPDSDFLRQFLYFFNAENIDDFMVLVQICRLLQQFVQESAGDVVRLFAGVDYSSKCALVNYRVKQLVYTCIRAVHQNRNQLKDQLLLTPKEFNASAVPLFEVLVLLIDPKLPWSCKIVGYLSQKNAFGLLREIILKGKDNVENCIYSEKGSSLERVLSVVICHIGQKPCICSYIDPRYSFSSQILTIPFLWHVFPNLRQDFAKQGLIQHYIHQVATFVPNLISFLPKDISDEFPTYACLLGNILETGGIALSQPDCSFDMAMDLAAVTTFLLDAHPFLTRSDGRENSMIAEDDNTGNDEVMEVALDRKLHQQISNAVDTRFLLQLTNILFRDISSAYGSDYGPDDREVAAVSAVCGFLYVIVNTLPLERIMTVLAYRTELVPMLWNFMKRCHENKKWSSLSERLSYLSGDASGWLLPLAVFCPVYKHVLMIVDNEEYYEQEKPLSLKDIRSLIILLRQALWQLLWVNHTSSANSVKSVPVSTTTKRLLSVEAIEQRVSIVVSELLSQLQDWNNRKQFTSPSDFHADGVNDFFISQAVIENARANEILKQAAFLIPFTSRAKIFTSQLAAARQRHGSQAVFTRNRFRIRRDHILEDAYNQMSQLSEDDLRGLIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYEGDISELELYFVIVNNEYGEQTEEELLPGGKNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDVDDLRLHTNYTGGYHSEHYVIEMFWEVLKGFSLENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEALDRLPTSATCMNLLKLPPYRSKDQMETKLLYAINADAGFDLS* 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01411 1034 Pfam HECT-domain (ubiquitin-transferase) 729 1034 IPR000569 GO:0004842
Rops11g01411 1034 CDD HECTc 672 1032 IPR000569 GO:0004842
Rops11g01411 1034 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 10 1034 IPR044611 GO:0000209|GO:0061630
Rops11g01411 1034 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Rops11g01411 1034 MobiDBLite consensus disorder prediction 11 28 - -
Rops11g01411 1034 Gene3D Hect, E3 ligase catalytic domain 916 1033 - -
Rops11g01411 1034 ProSiteProfiles HECT domain profile. 693 1034 IPR000569 GO:0004842
Rops11g01411 1034 SMART hect_3 691 1034 IPR000569 GO:0004842
Rops11g01411 1034 Gene3D Hect, E3 ligase catalytic domains 674 912 - -
Rops11g01411 1034 MobiDBLite consensus disorder prediction 1 28 - -
Rops11g01411 1034 SUPERFAMILY Hect, E3 ligase catalytic domain 663 1026 IPR035983 GO:0004842
Rops11g01411 1034 FunFam Putative Ubiquitin-protein ligase E3C 798 877 - -
Rops11g01411 1034 Gene3D Hect, E3 ligase catalytic domain 798 877 - -
Rops11g01411 1034 FunFam Putative Ubiquitin-protein ligase E3C 916 1033 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01411 Rops-Chr11 20860165 20888933 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01411 K10589 - gmx:100787467 1850.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01411 11 20860165 20888933 Rops11g01411 11 20860165 20888933 ECH
Rops2g05011 2 89952036 89971395 Rops11g01411 11 20860165 20888933 PCT