Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01410 ATGGTGAAGGTGCGTATGAACACGGCCGATGTGGCCGCCGAGGTGAAATGTCTTCGAAGGTTAATCGGAATGCGATGTTCCAATGTCTATGATCTCACTCCCAAGACCTACGTTTTCAAGCTTATGAATAGTAGTGGAGTCTCTGAATCAGGTGAAAGCGAGAAGGTTCTGCTTCTCATGGAAAGTGGTGTCAGATTGCATACCACTGTGTATATGCGTGATAAAAGCAACACTCCTTCAGGTTTTACTCTAAAATTGAGGAGGCATATTCGTACTAGAAGGCTTGAGGATGTGCGCCAACTTGGGTACGATCGGATTATTCTCTTTCAATTTGGATTGGGGGAGAATGCAAACTATGTTATATTGGAGCTTTATGCTCAAGGGAACATCCTCCTCACGGATTCTAATTTTACTGTCATGACTCTACTTCGGTCTCACAGGGATGATGACAAAGGGCTTGCAATCATGTCACGCCATCGTTATCCTACAGAAAGTTGTCGAGTTTTTGAGCGAACTACTACTGCAAAGTTGCAGACAGCCCTATCTTCTTCTAAGGAAGATGACAATGATGAGGCAGTTAAGGTCAATGGAAATGGAGCTGATGTTTCTAATGTAGCAAGAGAGAAGCAGGGAGCCCGGAAAGGTGGGAAGTCATCTGCCACATTGAAAACTGTCCTTGGGGAGGCACTCGGTTATGGACCTGCACTTTCTGAACATATAATATTAGATGCTGGCTTAATCCCTAATGCAAAACTTCCGAAAGATAAAATATGGGATGAAGCCACTGTTCATACTTTGGTCCAAGCTGTTGCAAAGTTTGAAGATTGGATGCAGGATATTATTTCAGGTGAACTAGTTCCAGAAGGATACATTTTGATGCAGAACAAAAATTTGGGGAAGGATTCTTCCATATCTCAACCTGAAAGTGTTAGCCAGATCTATGATGAGTTCTGCCCTATCTTACTCAACCAGTTTAAGTCAAGGGATTATACAAAGTTTGAGACATTTGATGCAGCCTTGGATGAGTTCTACAGCAAAATTGAGAGTCAAAGGGCTGAACAACAGCAGAAAGCCAAAGAAAACTCAGCTTCTCATAAACTTAATAAGATACGTCAGGATCAGGAAAATAGAGTGCACACTTTGAGGAAAGAAGCTGATCTCTGTGTTAAAATGGCAGAATTGATAGAATATAACTTAGATGATGTGGATGCTGCTATATTAGCTGTGCGTGTAGCTCTTGCAAAGGGTATGAACTGGGATGACCTTGCTCGGATGGTGAAGGAAGAAAAGAAAGCTGGAAACCCAGTAGCTGGTCTCATCGACAGGCTCCATCTTGAGAGGAACTGCATGACTTTACTGTTAAGCAACAATCTTGACGAAATGGATGATGATGAGAAGACACTCCCTGTGGATAAGATTGAAGTTGATTTAGCTCTCTCAGCACATGCCAATGCTCGGAGGTGGTATGAACAGAAGAAAAAGCAGGAGAGCAAACAGGAAAAGACTATAACTGCCCATGAAAAGGCTTTTAAAGCTGCAGAGAGAAAGACTCGTCTACAGCTTAATCAGGAAAAAACTGTTGCCACAATTTCACATATTCGCAAAGTTCACTGGTTTGAGAAATTTAATTGGTTCATTAGTAGTGAGAATTATTTGGTTATCAGTGGACGGGATGCCCAGCAAAATGAGATGATAGTGAAGCGTTATATGTCAAAAGGAGATCTTTATGTACATGCCGATCTACATGGAGCTTCTAGTACAGTTATCAAGAATCACAAGCCTGCGCAACCGGTTCCGCCTCTGACTCTGAACCAAGCAGGATGTTTCACAGTCTGCCATAGCCAGGCATGGGACTCGAAAATTGTTACTAGTGCCTGGTGGGTTTATCCTCATCAGGTTAGTAAAACTGCTCCTACAGGGGAATATCTGACAGTAGGGAGTTTCATGATCCGGGGAAAGAAAAGTTTTCTTCCACCTCACCCTCTTATCATGGGTTTTGGCCTGCTATTTCGCTTGGATGAGAGTTCCTTGGGATCACATTTAAATGAAAGGAGGGTAAGAGGAGAAGAGGAAGCAGTAGAAAGTGGCCCTGTTGAAGAACAATCTGATTCAGAATCTGAGAAGGATGTGACTGATGGAAAATCTGATGCAGACTCAGAAAGGAATGGTAATTTATCTGCAGATTCACACAAACCCCTATCAGAAGACCTTCTTGGTGACTCATCTCAAAGTAGTTTAGCTACAATTGATGCCAAAACTGCAGTTTCACATGATTTTCCTGCGAAAGAGACAAGTACAGCGAATATGGTAGATAGTGAGAAATTATCTGACATTAGTGGAAATGGCTTAGCATCTGTCACTCCTCAACTTGAGGAACTTATTGATCGAGCTCTAGGACTTGGATCTGTTGCTAAATCAAGTAAAAATTATGGAGTTGAGAACTCTCAGATTGATTTAGGCAGTGAGAACCCTTTTGAACAGAGCAAACCTGCAGTAAGGGATAAACCATATATATCAAAAGCTGAGAGAAGAAAGCTTAAAAAAGAACAGAAACATGGTGAAGCACATCCAAGTGTTGAACATGGAAAGGATGAATCGAAACTAAAAGATACATCTCCTAATCTACCTGCAAAAGATGTTCAAAATTTGAAGACAGGTGGTGGTCAAAAAATCAGCCGTGGACAGAAAGGCAAACTTAAGAAGATAAAGGAGAAGTATGCTGACCAGGATGAGGAAGAAAGGAGCATCCGAATGGCACTATTGGCTTCCTCTGGAAAATCAATCAAGAAGGAAGAGACATCATATGGAAATGAAGCATCAGACAAAGGGGAAAAACCTGAAAGTGGTCCGGCAGAAGCTCCAAAAATATGTTATAAGTGTAAGAAGGTCGGTCACTTATCTCGGGATTGTAAGGAGCAACCAGATGTTCTTCTACGTAGTAATGCAATTGGTGAAGCTAAAGAAAATCCCAACATGAGTATAGAAGATGATAGGGTGGCAATGGAAGAAGATGATATTCATGAAATAGGAGAAGAAGAAAAAGAAAAACTAAATGACGTAGATTACTTGACAGGGAATCCACTCCCTAATGACATTCTCTTATATGCTGTTCCTGTATGTGGTCCATACAATGCAGTTCAATCTTACAAATATCGGGTGAAGATAATTCCTGGAACCATGAAGAAAGGGAAAGCTGCAAAAACTGCAATGAACTTATTCAGCCACATGCCAGAAGCAACAAGCCGGGAGAAGGAGTTGATGAAAGCCTGTACAGATCCTGAACTAGTTGCTTCCATTATTGGTAATGTTAAGATCTCGGCAGCTGGCCTTACTCAATTGAAGCAAAAGCAAAAGAAAGGCAAGAAGAGCAGCAAATAA 3378 0.415 MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLTPKTYVFKLMNSSGVSESGESEKVLLLMESGVRLHTTVYMRDKSNTPSGFTLKLRRHIRTRRLEDVRQLGYDRIILFQFGLGENANYVILELYAQGNILLTDSNFTVMTLLRSHRDDDKGLAIMSRHRYPTESCRVFERTTTAKLQTALSSSKEDDNDEAVKVNGNGADVSNVAREKQGARKGGKSSATLKTVLGEALGYGPALSEHIILDAGLIPNAKLPKDKIWDEATVHTLVQAVAKFEDWMQDIISGELVPEGYILMQNKNLGKDSSISQPESVSQIYDEFCPILLNQFKSRDYTKFETFDAALDEFYSKIESQRAEQQQKAKENSASHKLNKIRQDQENRVHTLRKEADLCVKMAELIEYNLDDVDAAILAVRVALAKGMNWDDLARMVKEEKKAGNPVAGLIDRLHLERNCMTLLLSNNLDEMDDDEKTLPVDKIEVDLALSAHANARRWYEQKKKQESKQEKTITAHEKAFKAAERKTRLQLNQEKTVATISHIRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYVHADLHGASSTVIKNHKPAQPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKSFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEAVESGPVEEQSDSESEKDVTDGKSDADSERNGNLSADSHKPLSEDLLGDSSQSSLATIDAKTAVSHDFPAKETSTANMVDSEKLSDISGNGLASVTPQLEELIDRALGLGSVAKSSKNYGVENSQIDLGSENPFEQSKPAVRDKPYISKAERRKLKKEQKHGEAHPSVEHGKDESKLKDTSPNLPAKDVQNLKTGGGQKISRGQKGKLKKIKEKYADQDEEERSIRMALLASSGKSIKKEETSYGNEASDKGEKPESGPAEAPKICYKCKKVGHLSRDCKEQPDVLLRSNAIGEAKENPNMSIEDDRVAMEEDDIHEIGEEEKEKLNDVDYLTGNPLPNDILLYAVPVCGPYNAVQSYKYRVKIIPGTMKKGKAAKTAMNLFSHMPEATSREKELMKACTDPELVASIIGNVKISAAGLTQLKQKQKKGKKSSK* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01410 1125 SUPERFAMILY Retrovirus zinc finger-like domains 945 975 IPR036875 GO:0003676|GO:0008270
Rops11g01410 1125 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Rops11g01410 1125 MobiDBLite consensus disorder prediction 680 742 - -
Rops11g01410 1125 Pfam Zinc knuckle 956 972 IPR001878 GO:0003676|GO:0008270
Rops11g01410 1125 SMART c2hcfinal6 956 972 IPR001878 GO:0003676|GO:0008270
Rops11g01410 1125 Pfam NFACT protein RNA binding domain 541 652 IPR008532 -
Rops11g01410 1125 MobiDBLite consensus disorder prediction 931 949 - -
Rops11g01410 1125 MobiDBLite consensus disorder prediction 875 889 - -
Rops11g01410 1125 Pfam NFACT N-terminal and middle domains 10 534 - -
Rops11g01410 1125 MobiDBLite consensus disorder prediction 680 694 - -
Rops11g01410 1125 Pfam NFACT protein C-terminal domain 1013 1106 IPR021846 -
Rops11g01410 1125 ProSiteProfiles Zinc finger CCHC-type profile. 957 972 IPR001878 GO:0003676|GO:0008270
Rops11g01410 1125 MobiDBLite consensus disorder prediction 833 872 - -
Rops11g01410 1125 MobiDBLite consensus disorder prediction 928 952 - -
Rops11g01410 1125 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 1 1104 - -
Rops11g01410 1125 MobiDBLite consensus disorder prediction 814 913 - -
Rops11g01410 1125 MobiDBLite consensus disorder prediction 701 725 - -
Rops11g01410 1125 FunFam nuclear export mediator factor Nemf 6 163 - -
Rops11g01410 1125 Gene3D - 934 980 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01410 K24971 - gmx:100807437 1896.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01410 11 20842704 20853379 Rops11g01410 11 20842704 20853379 ECH