Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01199 ATGACTACCACCACCACCACCAACCCTTTGTTCCAAACCAGATTGTTTTCTCCACCCACCACACTCAATTCTCCATTTTCTACATTCCTTGTGTCAAAGAGGAGGCTCCTCTCAAATGGGTTCTTGAATGCTAAACCCCTTCTCAAAGATGGCACCCTCAGTGTTGATGGCAAGGATGCATTAAGGGGTGTGCCTAAAAATGTGGTGGTGACCCCTTTCACAGATTCCTCTGCTTACATAGGAGCCACTTGTGATCATGCTAGTTCACGCCTTGTCTTCAAGCTTGGACTCATCCAGGATGTGAGATTATTGTGCCTATATAGATTTAAGATTTGGTGGATGATACCAAGAGTGGGGAGGTCAGGGAGTGACATTCCTATTGAAACTCAGATGTTGCTCTTGGAAACAAGAGAAGGAAAAGATTCTCAATCATCCAATGAAGATAATTCATATATCATTTTCTTGCCAGTTCTAGATGGTGCATTTAGAAGCAGCTTGCAAGGAAATTCATCTAATGAACTTGAGCTTTGTGTTGAAAGTGGAGACCCAGCAGTAGTTACTTCCAAGTCCTTAAATGCTGTTTTCATGAATTATGGAGACCATCCATTTGATCTAGTGAAGGAATCTATGAAGGTTTTGGCAGAGCAGAGTGGTAACTTTTCACTGAGGGAAACCAAACAGATGCCAGGAATGTTAGATTGCTTTGGTTGGTGCACTTGGGATGCTTTTTATCAGAGTGTTAATCCTCAGGGAATCAAGGATGGACTCAGGAGTTTATCTGAAGGAGGCACACCGGCAAAATTCTTGATAATAGATGATGGATGGCAAGATACTATTAATGGGGTTCAAAAAGATGGGGAGCCATTTATTGAAGGATCACAATTTGGTGGAAGATTAATCAGCATAAAAGAAAACAATAAATTCCGAGCAAAGGGAGATGTAACCGAAAGTGGGGCACCTAATAGTCTAAAGGATTTTGTTTTAGATATCAAGAGAACTTTTGGTCTCAAGTATGTCTATGTATGGCATGCTCTACTGGGTTACTGGGGAGGGTTAGATCAAAATGCTTCTGGAACTAAGAAGTATAATCCAAAATTAAAATACCCTATACAATCACCAGGGAATTTGGCAAATACAAGGGATATATCTATGGATGCAATGGAGAAGTATGGTATTGGTGTCATTGATCCAGCAAAAGTTTCAGAGTTTTATGATGATCTGCACAGCTATCTCGTTTCTCAGAATGTTGATGGGGTTAAGGTTGATGTTCAGAACATACTGGAAACTATTTCAAGTGGTCTTGGAGGTCGTGTTTTTCTCACTAGACACTTTCAACAAGAGCTTGAAAAGTCCATATCAACCAACTTTCAGGACAATAGCATAATCTGCTGCATGGGTCACAGCACAGACTCCATCTACCACTCAAAACAAAGTGCAATTACACGAGCATCTGATGACTACTATCCAAAAAACCCCAAAACACAGTCTCTACATATTGCTGCTGTAGCTTTCAACAGCATATTCCTTGGTGAAGTTGTAGTACCAGACTGGGACATGTTCTATAGTCTCCATGATGCAGCTGAGTTTCATGCAGTAGCTAGAGCAGTCGGAGGCTGTGGAGTATATGTAAGTGACAAGCCTGGCCAACATGATTTCAATGTACTGAAGAAGCTTGTACTTCCTGATGGATCAGTGCTCAGAGCCAGATATCCCGGAAGACCAACACGTGATTGTTTATTTATTGATCCAGTTATGGATAAGAAGAGCCTTCTGAAGATTTGGAACTTGAACAAATGTGGGGGAGTTATCGGCATCTTCAATTGCCAAGGAGCAGGTTCCTGGCCTGGTCTTGAAAGTAATGCCGAGGAAGACATCATTCTTGAGCTATCAGGCAAGGTTTCTCCCTCAGATATTGAGTATTTTGAAGAGGTTTCAGCCGGACAATGGACTCAAGATTGTGCAGTTTTTCGCTTCAGTACAGGGTCTCTGACACGACTATCAAAGGAAGAATCAGTGGATGTCACATTAAAAGTTTTGCAATGTGATGTGGTCACTGTATCTCCCATAAAGGTTTACAATCAAACAATTCAGTTTGCTCCAATAGGACTAACAAACATGTACAACTCTGGCGGAGCTGTTGAAGCAGTTGACTTCAGTGATTCTTTTGGATCTAAAATACACATAAAAGGTAGAGGAGGAGGTGACTTTGGAGCTTACTCCAACTTGAAGCCAAAGTCTTGCTTAGTAAATTCTGAAGATATGGAGTTCCAATTTAGAGGGGAAGATAGTTTGTTAACAATAACAATTTCAGCTAAGACCAGTTCATGGGACATCACCATCTGCTACTGA 2349 0.4121 MTTTTTTNPLFQTRLFSPPTTLNSPFSTFLVSKRRLLSNGFLNAKPLLKDGTLSVDGKDALRGVPKNVVVTPFTDSSAYIGATCDHASSRLVFKLGLIQDVRLLCLYRFKIWWMIPRVGRSGSDIPIETQMLLLETREGKDSQSSNEDNSYIIFLPVLDGAFRSSLQGNSSNELELCVESGDPAVVTSKSLNAVFMNYGDHPFDLVKESMKVLAEQSGNFSLRETKQMPGMLDCFGWCTWDAFYQSVNPQGIKDGLRSLSEGGTPAKFLIIDDGWQDTINGVQKDGEPFIEGSQFGGRLISIKENNKFRAKGDVTESGAPNSLKDFVLDIKRTFGLKYVYVWHALLGYWGGLDQNASGTKKYNPKLKYPIQSPGNLANTRDISMDAMEKYGIGVIDPAKVSEFYDDLHSYLVSQNVDGVKVDVQNILETISSGLGGRVFLTRHFQQELEKSISTNFQDNSIICCMGHSTDSIYHSKQSAITRASDDYYPKNPKTQSLHIAAVAFNSIFLGEVVVPDWDMFYSLHDAAEFHAVARAVGGCGVYVSDKPGQHDFNVLKKLVLPDGSVLRARYPGRPTRDCLFIDPVMDKKSLLKIWNLNKCGGVIGIFNCQGAGSWPGLESNAEEDIILELSGKVSPSDIEYFEEVSAGQWTQDCAVFRFSTGSLTRLSKEESVDVTLKVLQCDVVTVSPIKVYNQTIQFAPIGLTNMYNSGGAVEAVDFSDSFGSKIHIKGRGGGDFGAYSNLKPKSCLVNSEDMEFQFRGEDSLLTITISAKTSSWDITICY* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01199 782 Pfam Raffinose synthase or seed imbibition protein Sip1 49 768 IPR008811 -
Rops11g01199 782 FunFam Uncharacterized protein 232 560 - -
Rops11g01199 782 Gene3D Aldolase class I 231 554 IPR013785 -
Rops11g01199 782 PANTHER - 48 776 IPR008811 -
Rops11g01199 782 SUPERFAMILY (Trans)glycosidases 231 559 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01199 Rops-Chr11 17650324 17655489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01199 48 780 Glycoside Hydrolase AT1G55740 47.867 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01199 - - gmx:100819413 1383.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01199 11 17650324 17655489 Rops11g01199 11 17650324 17655489 ECH