Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01179 ATGGGGCTTGTTTCCGAGGATGCCCTCAACCAACTCCAAGCTCTCATGGATCAAGTTGAGGAGCCATTGCAGAAAACGTTTCAGGAAGTTCATCAAGGATATGTCACTGAAACATTAATGCGGTTTCTAAGAGCAAGGGAGTGGAATACTTCCAAGGCCCATAAAATGTTAGTTGATTGTTTAAAATGGAGAGTGCAAAATGAGATTGACAACGTATTATCTAAACCAATAATTCCTCAAGATTTATACAGAGCAGTGCGAGATTCACAACTCATAGGATTGTCAGGGTACTCAAGAGAGGGTCTGCCTGTCTTTGCAATTGGTGTTGGGCTCAGCACATTTGACAAAGCATCTGTCCATTATTATGTGCAGTCTCACATTCAAATTAATGAATATCGTGATCGTGTAATCTTGCCTTCTGCATCAAAGAAGCATGGGCGCCCTATTACAACATGTGTGAAGGTTTTGGATATGACTGGTCTGAAGCTGTCAGCCCTGAATCATATTAAGTTGTTATCAATAATATCATCCATCGATGATCTGAATTATCCTGAGAAGACAAATACTTATTACATTGTAAATGCCCCATATGTATTTTCAGCTTGTTGGAAGGTTGTGAAGCCACTTTTACAAGAGAGGACAAGAAGAAAAGTGCAAGTCTTAGCGGGTTGTGGGCGAGATGAGCTGTTGAAGATCATGGATTATGCATCTCTGCCACATTTCTGTAGAAAAGAAGGCTCTGGATCATCCAGACATTCAGAGAATGGAAGTGAAAATTGCTATTCCTTGGATCACCCTTTCCATCAACAGCTCTACAATTACATCAAGGACCAATCCAGAATCCATGAAGCTGTTGAACCCATCAAGCAGGGATCTTTCCATGTAGATTTTCCTGAACCTTCTGCTGAGGAAGCAGTGATTGCCAAGACTATTGAGTCAGAGCTACACAAGTTTGAGAACAGCCATGGGGATGGTGATTGA 981 0.4139 MGLVSEDALNQLQALMDQVEEPLQKTFQEVHQGYVTETLMRFLRAREWNTSKAHKMLVDCLKWRVQNEIDNVLSKPIIPQDLYRAVRDSQLIGLSGYSREGLPVFAIGVGLSTFDKASVHYYVQSHIQINEYRDRVILPSASKKHGRPITTCVKVLDMTGLKLSALNHIKLLSIISSIDDLNYPEKTNTYYIVNAPYVFSACWKVVKPLLQERTRRKVQVLAGCGRDELLKIMDYASLPHFCRKEGSGSSRHSENGSENCYSLDHPFHQQLYNYIKDQSRIHEAVEPIKQGSFHVDFPEPSAEEAVIAKTIESELHKFENSHGDGD* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01179 326 Pfam CRAL/TRIO domain 90 241 IPR001251 -
Rops11g01179 326 CDD SEC14 83 241 IPR001251 -
Rops11g01179 326 SUPERFAMILY CRAL/TRIO domain 81 278 IPR036865 -
Rops11g01179 326 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 1 323 - -
Rops11g01179 326 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Rops11g01179 326 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 79 239 IPR001251 -
Rops11g01179 326 Pfam CRAL/TRIO, N-terminal domain 8 59 IPR011074 -
Rops11g01179 326 SUPERFAMILY CRAL/TRIO N-terminal domain 13 74 IPR036273 -
Rops11g01179 326 Gene3D - 2 286 IPR036865 -
Rops11g01179 326 SMART sec14_4 79 247 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01179 Rops-Chr11 17306808 17312703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01179 1 323 Acyl Lipid Metabolism Gene Families AT5G47730 76.471 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01179 K26544 - gmx:100793867 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01179 11 17306808 17312703 Rops11g01179 11 17306808 17312703 ECH
Rops2g04614 2 84104792 84109685 Rops11g01179 11 17306808 17312703 PCT