Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01115 ATGAAGACAGAATCGCGTTCGAAAGAGGAAACGAAGACGTATCAGGAATGGTTCAACTTGGCAGACTCAGATGGAGATGGTCGCATCAGTGGGAACGACGCTACCAAGTTCTTTGCTCTCTCCAACTTGCCTCGCTCTCAACTCAAGCAACTTTGGGCTCTTGCCGATACAAAACGACAAGGATTTTTAGGTTTCCCTGAGTTCGTTACTGCAATGCAGTTAGTTTCGCTGGCACAAGCAGGATACGAACTTAACTCAGATATACTCAAAAATCAAATTGATAAGGAAAATGTTAAACCTCCAGTGATGGAAGGACTCGATGCTTTAGTGGCAAAAGCAAAGAGTTTAACAATTAACGCACCACCTGAAGTAAATGTGATCGCTCAGCCTCAACCATTTCCAACTAACCCACGGTTCGGTTCAAAATCTTCAAAGAAATTACCTATCAGTTCAGTTACATCGATAATTGATGGCTTGAAGAGATTGTATACTGAGAGGCTAAAGCCCTTGGAAGTCACTTATCGATACAATGATTTTGTATCTCCATTGTTGACCAACAGTGATTTTGATGCTAAACCCATGGTCATGCTTCTTGGTCAATATTCTACGGGAAAAACAACATTTATAAAACATTTGTTAAAATGCGATTATCCAGGAGCGCACGTTGGACCGGAGCCTACAACTGATAGATTTGTTGTTGTTATGTCTGGACCTGATGAGAGGAGTATTCCTGGAAATACTATAGCTGTTGATGCTGACATGCCTTTTAGTGGCCTGACAACATTTGGAGGTTCATTTTTATCAAAGTTCCAATGTTCTCAAATGCCACATCCACTGCTGGATGAAGTAACATTTGTTGACACACCTGGTGTCCTGTCTGGAGAGAAACAAAGGACTCAACGAAGCTATGATTTCACTGGCGTTGTATCTTGGTTTGCTGCCAAATGTGATCTCATTCTTCTCCTATTTGATCCCCATAAACTTGACATCAGTGATGAGTTTAAACGTGTAATCGCGTCTTTACGTGGTAATGATGACAAGATACGGGTGGTTTTAAATAAGGCAGACCAAGTTGATACTCAACAGCTTATGAGAGTCTATGGAGCCTTGATGTGGTCATTGGGGAAAGTTCTAAATACTCCTGAAGTTTCACGTGTATACATCGGCTCATTCAATGATAAGCCTATAGATGAAAGCTTGGTTGGTCGATTAGGACAGGATCTCTTTGAGAAGGAACAGAATGATCTGCTTGCAGATTTGATAGATATTCCAAAGAAGGCCTGCGATCGTCGGATCAATGAATTTGTTAAACGTGCTAGATCGGCTAAAATTCATGCATATATAATTAGCCATCTTAAGAAGGAGATGCCAGCAATAATGGGCAAAGCCAAGGCTCAGCAAAAGCTTATTGATAATCTTGAGGATGAATTTGCAAAGGTTCAAAGGGAGTTTCATTTACCAGCTGGTGATTTTCCCAATGTAGAGCACTTCAGAGAAGTTTTAAGTGGTTATATCATCGACAAATTTGAGAAACTAAAGCCTAAAATGATTCAAGCCGTAGATGACATGCTTGGATATGAAATACCGGAGCTTTTAAAGAAATTCAGAAATCCTTATGATTAA 1623 0.403 MKTESRSKEETKTYQEWFNLADSDGDGRISGNDATKFFALSNLPRSQLKQLWALADTKRQGFLGFPEFVTAMQLVSLAQAGYELNSDILKNQIDKENVKPPVMEGLDALVAKAKSLTINAPPEVNVIAQPQPFPTNPRFGSKSSKKLPISSVTSIIDGLKRLYTERLKPLEVTYRYNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKCDYPGAHVGPEPTTDRFVVVMSGPDERSIPGNTIAVDADMPFSGLTTFGGSFLSKFQCSQMPHPLLDEVTFVDTPGVLSGEKQRTQRSYDFTGVVSWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVSRVYIGSFNDKPIDESLVGRLGQDLFEKEQNDLLADLIDIPKKACDRRINEFVKRARSAKIHAYIISHLKKEMPAIMGKAKAQQKLIDNLEDEFAKVQREFHLPAGDFPNVEHFREVLSGYIIDKFEKLKPKMIQAVDDMLGYEIPELLKKFRNPYD* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01115 540 Pfam Dynamin family 195 354 IPR045063 -
Rops11g01115 540 Coils Coil 463 483 - -
Rops11g01115 540 CDD EH 14 80 IPR000261 GO:0005515
Rops11g01115 540 SUPERFAMILY EF-hand 7 81 IPR011992 -
Rops11g01115 540 Pfam N-terminal EH-domain containing protein 158 190 IPR031692 -
Rops11g01115 540 Pfam Domain of unknown function (DUF5600) 430 531 IPR040990 -
Rops11g01115 540 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Rops11g01115 540 Pfam Cytoskeletal-regulatory complex EF hand 9 75 IPR000261 GO:0005515
Rops11g01115 540 FunFam EH domain-containing protein 1 195 423 - -
Rops11g01115 540 ProSiteProfiles EF-hand calcium-binding domain profile. 46 78 IPR002048 GO:0005509
Rops11g01115 540 Gene3D - 4 103 - -
Rops11g01115 540 CDD EHD 194 438 - -
Rops11g01115 540 ProSiteProfiles EH domain profile. 10 104 IPR000261 GO:0005515
Rops11g01115 540 PANTHER EH DOMAIN 9 537 - -
Rops11g01115 540 Gene3D - 159 531 - -
Rops11g01115 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 462 IPR027417 -
Rops11g01115 540 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 189 425 IPR030381 GO:0005525
Rops11g01115 540 Gene3D - 195 423 IPR027417 -
Rops11g01115 540 SMART efh_1 13 41 IPR002048 GO:0005509
Rops11g01115 540 SMART efh_1 47 75 IPR002048 GO:0005509
Rops11g01115 540 SMART eh_3 3 98 IPR000261 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01115 Rops-Chr11 16317439 16326735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01115 8 540 EF-hand Containing Proteins AT4G05520 78.987 0.0 892
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01115 K12483 - gmx:100805498 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01115 11 16317439 16326735 Rops11g01115 11 16317439 16326735 ECH
Rops2g04676 2 85031847 85036638 Rops11g01115 11 16317439 16326735 PCT