Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g01047 ATGGCTGAGGCTGCACAATCTAATGCTGAGTTGTTGGAATGGCCAAAGAAAGATAGGCGTCGCTTCCTGCATGCTGTTTACCGTGTTGGTGATCTTGATCGCACCATCAAGTTTTATACTGAATGTTTTGGAATGAAGCTTTTGAGGAAAAGAGATGTTCCTGAAGAGAAATACGCCAATGCTTTTCTTGGATTTGGCCCCGAACAATCTCATTTTGTTGTGGAATTAACTTATAATTATGGGGTAACCTTGTATGATATTGGAACTGGCTTTGGACATTTTGCTATTGCAACACCAGATGTTTACAAATTGGTTGAAGACATCCGCGCTAAGGGTGGAAACATCACTAGGGAGCCTGGTCCAGTTAAGGGTGGGTCATCTGTTATTGCCTTTGTGAAGGATCCTAATGGTTACACTTTTGAGCTCATCCAAAGAGCTTCGACCCCTGAACCATTGTGCCAAGTAATGCTTCGTGTTGGCGATTTAGAGCGCTCAATTAAATTTTATGAAAAGGCTTTGGGTATGAGGGTGGTGAAGAGGACTGATAGGCCTGAATACAAGTACACTATTGCTATGCTTGGGTATGCAGAGGAGCATGAGACAACTGTGCTGGAGCTAACTTATAACTATGGTGTCACTGAATACACCAAGGGAAATGCTTATGCACAGGTTGCTATTGGCACTGATGATGTTTACAAGAGTGCTGAGGTAGTTAACATAGTCACACAAGAGCTTGGAGGGAAAATTACTCGGCAACCAGGGCCACTTCCTGGCATCAACACAAAGATCACTTCTTTCTTAGATCCAGATGGATGGAAAACCGTCTTGGTTGACAATCAAGATTTTCTGAAGGAACTGGAGTAA 864 0.4294 MAEAAQSNAELLEWPKKDRRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYANAFLGFGPEQSHFVVELTYNYGVTLYDIGTGFGHFAIATPDVYKLVEDIRAKGGNITREPGPVKGGSSVIAFVKDPNGYTFELIQRASTPEPLCQVMLRVGDLERSIKFYEKALGMRVVKRTDRPEYKYTIAMLGYAEEHETTVLELTYNYGVTEYTKGNAYAQVAIGTDDVYKSAEVVNIVTQELGGKITRQPGPLPGINTKITSFLDPDGWKTVLVDNQDFLKELE* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g01047 287 NCBIfam lactoylglutathione lyase 22 147 IPR004361 GO:0004462|GO:0046872
Rops11g01047 287 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 23 142 IPR004360 -
Rops11g01047 287 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 154 273 IPR004360 -
Rops11g01047 287 Gene3D - 1 147 IPR029068 -
Rops11g01047 287 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 21 145 IPR037523 -
Rops11g01047 287 PANTHER LACTOYLGLUTATHIONE LYASE 4 287 - -
Rops11g01047 287 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 20 148 IPR029068 -
Rops11g01047 287 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 152 279 IPR029068 -
Rops11g01047 287 Gene3D - 148 287 IPR029068 -
Rops11g01047 287 FunFam Lactoylglutathione lyase 148 287 - -
Rops11g01047 287 ProSitePatterns Glyoxalase I signature 2. 88 100 IPR018146 GO:0004462|GO:0046872
Rops11g01047 287 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 151 279 IPR037523 -
Rops11g01047 287 CDD GlxI_Ni 23 143 - -
Rops11g01047 287 ProSitePatterns Glyoxalase I signature 1. 154 175 IPR018146 GO:0004462|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g01047 Rops-Chr11 15379654 15384298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g01047 154 278 Calmodulin-binding Proteins AT1G08110 30.000 8.76e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g01047 K01759 - gmx:100794901 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g01047 11 15379654 15384298 Rops11g01047 11 15379654 15384298 ECH
Rops11g01047 11 15379654 15384298 Rops2g04719 2 85545849 85558235 ECH
Rops2g04719 2 85545849 85558235 Rops11g01047 11 15379654 15384298 PCT