Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00768 ATGGAGGGCAAAAATTTGGATTCCAATAATCAGGTGCAACTTCTAGAAAATTTATCCGAAAGGGTTTCTAGTTGCTCCCTTGGCCACCGGATATCCAATTCCAATTCTCCTTTGGATGGTGAGGTGGGTGATAATAGGAAGGATCATGTTACTAATGAGAATTATGATTCTTTTTCCTCTGCTAGCATTCAAAGGCATAGTATGAATTCATTTAGACCATATCCTGAATTACCTGAAGAACCATTGGACAAGAATAAAGAAGACATGGAGTCTTCAGCTAATCATCAGAAGCGGGGGAAATACTTCTATTATGATGCTCCACTGTATGAAGATACTGGGGTTTGGATACCAGTTTCAGTTCCACCTATGTTGGAAGATGATCACAAAGAGTGGGCCAAAGGTTTTCACTCAAATGGTGGCTATTTTCCTGATGATGACATGGGATGGAATCAATATGTTGGAGAAGAAAGGGAATTGACTATGTGGGATGTGCTAGTAGAAATGTTACTTGTAGCGAGGGGAAAAGTGACTTCTTTGGCATCAGGAGATATTCATGCTTGTACCTTTTCATGGATATCCAGTCATGTACTTGAACAAGCCTGGAGAGAGATGGCACAAACTCTTACAGAGGCTAACTTTGGTAATGTGAAGGAACTGCTAGAATCAGAGCCTCCAAAATGGTTGGCAGATAGTGCTGCTGCTTCTTGTATGCTTTGTGGCGTGAGGTTTCATCCCATCATGTGCTCCCGGCATCACTGCCGGTTTTGTGGAGGAATATTTTGTGGTGAATGCTCCAAAGGACGGAGTTTGTTGCCATCAAAGTTCCGAGTTTCTGACCCCCAAAGAGTCTGTGATGTATGCTGTGTCCGACTTGAGTCTGTACAGCCTTATTTGATGAATCATGTAAGTAATGCTGCTCAGTTGCCAACCCATGACCTTACAGACCTCAGCACTTTGAGATCATGGGTTAATTTTCCTTGGGGGCAGTCCATGGAATATGAAATTTACAAGGCGACTAACACTATCAAGGCTTATAATCAGATAGGTTATTTAAAGCCTGAGAAGTCAATCCCAGATGTCATTCTAAGGCAAGCAAAAGGTCTTGCAATTATCACTGTGGTCAAAGTAGGAGTGGTGGTTACTTATAATATTGGAACAGGACTTGTGGTTGCACGTAGGGAAGATGGTTCATGGTCTCCGCCATCTGCTGTTTCCACATTTGGTGCTGGGTGGGGGGCTCAGGCTGGAGGAGAGTTAACAGACTTCATTATTGTTCTGAGAACGGATGATGCTGTCAAGACATTTAGTGGTAATGTTCATCTTTCACTTGGAGCTGGTTTGAGTGCTGCAGTTGGCGTTGTTGGAAGGGCACTTGAAGCTGATGTTCGAGCCGGTGATGGTGGCTATGCTGCTTGTTATACATACAGCTGCAGTAAAGGTGCATTTGTTGGATGTTCACTTGAAGGCAGTGTTGTCACCACTCGCACACAAGAAAATTGTCGTTTTTATGGCAGCCAATCTATAACTGCAACAGATATACTTCTTGGCTCGCTGCCTAGGCCACCTGCTGCTGCCATTCTCTACCGTGCTCTTGCAGATTTGTATTTGAAGCTTGATGGTTAA 1623 0.435 MEGKNLDSNNQVQLLENLSERVSSCSLGHRISNSNSPLDGEVGDNRKDHVTNENYDSFSSASIQRHSMNSFRPYPELPEEPLDKNKEDMESSANHQKRGKYFYYDAPLYEDTGVWIPVSVPPMLEDDHKEWAKGFHSNGGYFPDDDMGWNQYVGEERELTMWDVLVEMLLVARGKVTSLASGDIHACTFSWISSHVLEQAWREMAQTLTEANFGNVKELLESEPPKWLADSAAASCMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPSKFRVSDPQRVCDVCCVRLESVQPYLMNHVSNAAQLPTHDLTDLSTLRSWVNFPWGQSMEYEIYKATNTIKAYNQIGYLKPEKSIPDVILRQAKGLAIITVVKVGVVVTYNIGTGLVVARREDGSWSPPSAVSTFGAGWGAQAGGELTDFIIVLRTDDAVKTFSGNVHLSLGAGLSAAVGVVGRALEADVRAGDGGYAACYTYSCSKGAFVGCSLEGSVVTTRTQENCRFYGSQSITATDILLGSLPRPPAAAILYRALADLYLKLDG* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00768 540 PANTHER SH3YL1 PROTEIN 191 538 - -
Rops11g00768 540 MobiDBLite consensus disorder prediction 77 93 - -
Rops11g00768 540 FunFam Zinc finger family protein 216 298 - -
Rops11g00768 540 CDD SYLF_FYVE 333 534 - -
Rops11g00768 540 MobiDBLite consensus disorder prediction 28 93 - -
Rops11g00768 540 Pfam Las17-binding protein actin regulator 408 532 IPR007461 -
Rops11g00768 540 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 230 292 IPR017455 -
Rops11g00768 540 SMART fyve_4 222 293 IPR000306 GO:0046872
Rops11g00768 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 303 IPR013083 -
Rops11g00768 540 MobiDBLite consensus disorder prediction 54 69 - -
Rops11g00768 540 SUPERFAMILY FYVE/PHD zinc finger 225 305 IPR011011 -
Rops11g00768 540 Pfam FYVE zinc finger 226 291 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00768 Rops-Chr11 11008819 11013289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00768 227 310 EF-hand Containing Proteins AT3G14270 34.831 1.38e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00768 K20523 - gmx:100813648 954.896
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00768 11 11008819 11013289 Rops11g00768 11 11008819 11013289 ECH