Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00562 ATGGATGCTCACATTACTGATTCAGACTGGGAGACTTCCAGTGAGAGCAGCAGCAGTAGTGAGGATCAAGAGGATATTGATTTTCAATATGGTGGGCAAGCTCGGAACATATTATCAAGTTTAGAGGAAAGCATTGGGAGGATTGATGATTTTCTCTCATTTGAGAGGGTATTTGCTCATGGGGATGTGGTCTGCTCCTTGTCAGACCCATCTGGACAGATGGGGAGGGTCATAAGTGTTGATATGTTAGTGGATTTAGAAAGTGTTCAAGGAAACATATTAAAAAATGTGAATTCCAAGAAACTTTTGAAGATTCTCTCCATTTCAGAAGGTGACTATGTAGTTAAAGGGCCATGGCTTGGTCAGGTTCAAAAGGTGGTGGACAGAGTGACTGTATTGTTTGATGATGGAACTAAATGTGAGGTCATTACCTTGGAAAAAGATAAGCTTTTACCGCTGACTAATAATATTCTTGAAGATTCACAGTATCCATATTATCCAGGGCAGAGAGTAAAGGTTAAGTCCTCCACTGCTTCTAAATCAGCTAGATGGCTATGTGGCACTTGGAAAGACAATCATGATGAAGGAACTGTTTGTGCTGTGGAAGCAGGTTTGGTGTATGTTAATTGGCTTGCCTCTGTTCTTCTGGGTTCCAATTTGAATGTGAATGCTCCTCCATGCTGGCAAGATTCCAAAAACTTGACCTTGTTGTCATGTTTTTCACATGCAAACTGGCAACTTGGTGACTGGTGCATGCTCCCAGTTGCAGACCAAAAAGAACAGATGGTACAGATTATACAAGATGCATCTACGAATGATCTTCCTAATGAGCTTTGTATGGCTAGAGGATATAAGAGAAGAAACCTTAACTCTCACATGGGGGAATTATTTATAGTTGGGAAGATAAAGACCAAAGTTGATGTTGTTTGGCAAAATGGTGAACATACTTTGGGGTTAGATCCACAGAACTTAATCCCGGTGAGTGTCATAAACACTCATGAATTTTGGCCTCATCAATTTGTGCTGGAAAAAGGTACTTCTGATGATCCGCTTAAGCCTGGCAATCAAAGATGGGGTGTTGTTCTATCAGTGGATGCAAAAGAGCATACTGTAAATGTACAATGGCGAACTGTTCCCATATCTGAGCCAGATAATTTGGCTGGAGAAACAATGATGGAAACTGTGAGTGCCTACGAACTTGTTGAGCACCCAGATTATTCCTGTTGTTTTGGTGATATTGTGTTCAAGGTGGCTCAAAACCAGCTTGGTTACCAAGCTGATAAAGATAATGCAAATTCAGTGACTGACTTGAACATGGAAGCTCCTCTGAGAAACTGGGACCAAATCAGTCATCAGACTAAGTCCCAAGATAACTGTTACCTGTCCTGTATCGGCAATGTTACTGGTTTCAAAGATGGTGATGTGGAGGTGAAATGGGCCACTGGTTTAACAACCAAGGTTGCACCTTATGAAATTTTTCGGATTGATAAACAAGAAGGTTCAACTGCATCCCCTGTTTCTTATGAAGCAAATGTTGAGGAGCTGACTCAAGAGCTGATTGAACATGGAAGTATACCTTCTGACCAGAAGGGAAAGGACTTGTTAAACTGTGATGGTGATAGAAATAATTTTGAAAAGCATCCAGGAGAGAGTAGTTCCTTTTCTCTTCCTCAAGCTGCCTTTGAACTGTTCTCCAGCATTAAAGCCAGCATCTTCCAAACACTTGGTGTAACATCATCATATGGAGCGGTTTCCCCAGTCCCTACATTTGAAGAGGAAAACGGATCTGATTTTCTTGATAAGAAAGATTTGGAAACTTGTTACCCTGACACTGAATCACATCCCCTGAGCAAGTTGCAGTCTACTGAAGATACAACTCCATACTGTGAAGTTGTTAGGATGCATGAGAGGAACGACTTTCCAGTTTCTTTAGACAGCAAAAATTCAAATCAGTTGAAGCAGTTCGATGTAATTGATAATTGCTCAGACCACCACTTTTTTAATGAGGGAAAAGGGCTGTCATTATCTCAGGTTAAAAAAGATTGGGTGAAAAAGGTACAGCAAGAATGGAGCGTCCTGGAGAAAAATCTTCCTGAAACCATTTATGTCCGTGTTTTTGAAGAAAGAATGGATCTCATGCGAGCAGCCATTGTCGGTGCATCAGGGACACCTTATCATGATGGGTTGTTTTTCTTTGATATATCCTTCCCTCCAGAGTATCCCAGTGAACCACCTATGGTGCACTATATTTCTGGTGGGCTACGTTTAAATCCTAATCTATACGAGTCAGGGAAAGTCTGTCTTAGTCTCCTAAATACGTGGACTGGTACATCTACTGAAGTGTGGAACCCTGGAACTTCCACAATTCTTCAAGTCCTTCTCTCTCTGCAGGCCCTTGTCCTTAATGAGAGGCCATATTTCAATGAGGCTGGGTATGATCAACAAATTGGCAGAGCTGAAGGAGAGAAAAACTCAGTGAGTTACAATGAGAATGCTTTCCTTGTCACCTGCAAATCCATGTTGTATCTATTAAGAAAGCCGCCCAAGCATTTCGAGGCATTGGTGGAAGAGCACTTTAAACAGCGCTCCAAACATATACTTCTTGCTTGTAAGGCATATCTTGAAGGAGCTCCCATTGGATATGCTTTTGGAGGTGGAAAAACTGAGCATGAAAACCAGAAGGGAACATCTGCAGGATTTAAAATTATGCTTGCTAAGCTCTTCCCCAAGCTTGTAGAAGCATTTTCTGATAAGGGAATTGATTGCTGCCAGTTTGTTGAGATGCAAAAGTAA 2793 0.4139 MDAHITDSDWETSSESSSSSEDQEDIDFQYGGQARNILSSLEESIGRIDDFLSFERVFAHGDVVCSLSDPSGQMGRVISVDMLVDLESVQGNILKNVNSKKLLKILSISEGDYVVKGPWLGQVQKVVDRVTVLFDDGTKCEVITLEKDKLLPLTNNILEDSQYPYYPGQRVKVKSSTASKSARWLCGTWKDNHDEGTVCAVEAGLVYVNWLASVLLGSNLNVNAPPCWQDSKNLTLLSCFSHANWQLGDWCMLPVADQKEQMVQIIQDASTNDLPNELCMARGYKRRNLNSHMGELFIVGKIKTKVDVVWQNGEHTLGLDPQNLIPVSVINTHEFWPHQFVLEKGTSDDPLKPGNQRWGVVLSVDAKEHTVNVQWRTVPISEPDNLAGETMMETVSAYELVEHPDYSCCFGDIVFKVAQNQLGYQADKDNANSVTDLNMEAPLRNWDQISHQTKSQDNCYLSCIGNVTGFKDGDVEVKWATGLTTKVAPYEIFRIDKQEGSTASPVSYEANVEELTQELIEHGSIPSDQKGKDLLNCDGDRNNFEKHPGESSSFSLPQAAFELFSSIKASIFQTLGVTSSYGAVSPVPTFEEENGSDFLDKKDLETCYPDTESHPLSKLQSTEDTTPYCEVVRMHERNDFPVSLDSKNSNQLKQFDVIDNCSDHHFFNEGKGLSLSQVKKDWVKKVQQEWSVLEKNLPETIYVRVFEERMDLMRAAIVGASGTPYHDGLFFFDISFPPEYPSEPPMVHYISGGLRLNPNLYESGKVCLSLLNTWTGTSTEVWNPGTSTILQVLLSLQALVLNERPYFNEAGYDQQIGRAEGEKNSVSYNENAFLVTCKSMLYLLRKPPKHFEALVEEHFKQRSKHILLACKAYLEGAPIGYAFGGGKTEHENQKGTSAGFKIMLAKLFPKLVEAFSDKGIDCCQFVEMQK* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00562 930 Gene3D Ubiquitin Conjugating Enzyme 643 922 IPR016135 -
Rops11g00562 930 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 681 841 IPR000608 -
Rops11g00562 930 CDD UBCc 683 836 IPR000608 -
Rops11g00562 930 MobiDBLite consensus disorder prediction 10 24 - -
Rops11g00562 930 FunFam Probable ubiquitin-conjugating enzyme E2 23 643 919 - -
Rops11g00562 930 Pfam Ubiquitin-conjugating enzyme 686 832 IPR000608 -
Rops11g00562 930 SMART ubc_7 684 841 - -
Rops11g00562 930 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 3 922 - -
Rops11g00562 930 MobiDBLite consensus disorder prediction 1 24 - -
Rops11g00562 930 SUPERFAMILY UBC-like 674 850 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00562 Rops-Chr11 7732942 7741123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00562 22 924 Miscellaneous Gene Families AT2G33770 50.829 0.0 900
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00562 K10581 - gmx:100805463 1542.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00562 11 7732942 7741123 Rops11g00562 11 7732942 7741123 ECH