Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00551 ATGGAGTGGAAGCTCCTTCGGTGGATTGCGAGCAGCAGGTCTTATTACACGAGCAGGACTAAGAAACCGAGCCTCTACTCTAAAATCAGCCCACTCGGAAATCCCAGCACAAGCGTGGTACCCGAGCTCGACGATTGGGTCTACAAGGGGAACAAGGTCAGTGTCGGAGAGCTTCGTCGCATCGTTCGTGATCTTCGAAAACGCAGTAGATTCTCCCAAGCCCTCCAGGTATCTGAGTGGATGAATAAGAATGGTGTGTGCATATTCTCTACTACTGAACATGCCGTGCATTTGGATCTGATTGGCAAGGTTCATGGATTTTCTTCTGCAGAAAGCTATTTTAACCGCTTGAATGATCAAGACAAAACTGAGAAGACATGTGGTGCTCTCTTGAATTGCTATGTTCGACAGCGCCAAATCGACAAGTCCCTCTCCCATTGGCAGAAAATGAAGGAGTTGGGGTATGCTTCATCACCTCTTACTTACAATGACATCATGTGTCTATACACAAACATTGGACAGCATGAGAAGGTTCCTGATGTGCTGACTCAGATGAAAGAAAACCAAGTTTTGCCCGACAACTTTAGCTACAGAATCTGTATAAATTCTTATGGTGTGAGGTCTGATATTGATGGAATGGAAAGAATATTGAAAGAGATGGAGAGTCAACCACACATTCTGATGGACTGGAACACCTATTCTGTTGTGGCTAATATCTATATAAAAGCTGGGCTTACAAGTAAGGCAGTTGATGCTCTGAAGAAATCTGAGGAGAGGCTGGATAAGAAAGATAGTCAGGGTCACAATCATCTTATCTCTCTTTATGCCCGTCTTGGACAAAAGAATGAAGTCACAAGACTCTGGGATCTGGAGAAAAGTGCTTTTAAGAGGTGCATAAACCGGGATTTTAAGACCATTTTGGAATCTCTGGTGAAGCTTGCAGAGTTCGATGAAGCAGAGAAATTACTTGAGGAATGGGAATCCTCTGGCAATTGTTATGATTTTTGTATCCCAAATATCCTAATCATTGGGTACTCGGAAAAAGGTTTTTCTGAGAAAGCAGAGGCCATGCTTGAAGATTTGCAGAAGAAGGGAAAGGCCACCAACCCAAACTGTTGGACTGCAGTCGCTGGTGGATACCTGCATGAGGGTGAGATGAAGAAAGCATTGAGGTGCTTGAAAACAGCTCTCTCTCTGTACAGGGAAGATAAAGAAGGATGGAAGCCTAATCCCAAGGTAATTGCGGGCCTATTGAGTTGGATTGGTGATAAGGGCAGTGTTGAAGATGCAGAAGTATTGGGGTTCATAAATGTACATTTTCTAAACATGAACCACCAAAGTATGATAAGATTGTCAACTGACCAAAACATCCAACCCAAGCAAAATATCAAAGTTAAAAGAACAGTACATTCACATCATATCCACACCACAAAAACTAAAAACTCCATTTCATGTATGGAAAGCAAAAGACAAAACCCTAGGAACATGAGGTCCAATCGAAGATCAATTTGCCCCGAACACCTTGGCAATCCTCTCAGTGGGAACCAAGGGAAGATAAGCCGAAACCCTATAACCTCTCGCGGCAGTGGAAACAACCGCCTCATTGTACTTCTTCGTACAATAAGCCGTTGTGGGCAACACGACATTAGAAACCTGAGGGAATAG 1665 0.4348 MEWKLLRWIASSRSYYTSRTKKPSLYSKISPLGNPSTSVVPELDDWVYKGNKVSVGELRRIVRDLRKRSRFSQALQVSEWMNKNGVCIFSTTEHAVHLDLIGKVHGFSSAESYFNRLNDQDKTEKTCGALLNCYVRQRQIDKSLSHWQKMKELGYASSPLTYNDIMCLYTNIGQHEKVPDVLTQMKENQVLPDNFSYRICINSYGVRSDIDGMERILKEMESQPHILMDWNTYSVVANIYIKAGLTSKAVDALKKSEERLDKKDSQGHNHLISLYARLGQKNEVTRLWDLEKSAFKRCINRDFKTILESLVKLAEFDEAEKLLEEWESSGNCYDFCIPNILIIGYSEKGFSEKAEAMLEDLQKKGKATNPNCWTAVAGGYLHEGEMKKALRCLKTALSLYREDKEGWKPNPKVIAGLLSWIGDKGSVEDAEVLGFINVHFLNMNHQSMIRLSTDQNIQPKQNIKVKRTVHSHHIHTTKTKNSISCMESKRQNPRNMRSNRRSICPEHLGNPLSGNQGKISRNPITSRGSGNNRLIVLLRTISRCGQHDIRNLRE* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00551 554 SUPERFAMILY TPR-like 309 407 IPR011990 GO:0005515
Rops11g00551 554 SUPERFAMILY TPR-like 113 401 IPR011990 GO:0005515
Rops11g00551 554 FunFam Pentatricopeptide repeat-containing protein mitochondrial 55 266 - -
Rops11g00551 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 123 157 IPR002885 -
Rops11g00551 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Rops11g00551 554 MobiDBLite consensus disorder prediction 487 526 - -
Rops11g00551 554 PANTHER OS12G0527900 PROTEIN 21 432 - -
Rops11g00551 554 NCBIfam pentatricopeptide repeat 126 155 IPR002885 -
Rops11g00551 554 NCBIfam pentatricopeptide repeat 161 193 IPR002885 -
Rops11g00551 554 Gene3D Tetratricopeptide repeat domain 43 207 IPR011990 GO:0005515
Rops11g00551 554 Gene3D Tetratricopeptide repeat domain 208 291 IPR011990 GO:0005515
Rops11g00551 554 Gene3D Tetratricopeptide repeat domain 292 433 IPR011990 GO:0005515
Rops11g00551 554 Pfam Pentatricopeptide repeat domain 148 205 IPR002885 -
Rops11g00551 554 Pfam PPR repeat 372 394 IPR002885 -
Rops11g00551 554 Pfam PPR repeat 339 365 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00551 Rops-Chr11 7639117 7641451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00551 24 438 EF-hand Containing Proteins AT1G02150 33.333 1.38e-78 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00551 - - lja:Lj6g3v2043070.1 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00551 11 7639117 7641451 Rops11g00551 11 7639117 7641451 ECH