Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00349 ATGGCGTCCGCCGTCTTAGCCAACCGGAACGAACCTAATTGGCCACAGCATAAAGGCGGTGGAGCAGGATTCATGGGAAAAGTACCTTTCTCTAACCCTAACCCTAACCCTAAAATTGGAAACAGCAAGAGGACTCAATCGGCTTCCGATGATGCTTCCTCTATCAATCGTCGATCGAACGATGTTAATCACTCTCAATATGTGACCTTCAACGTGGCTTCGTCCACGAAGAGGGAGCTGAACGACCTCAAGAATCGTCTCGTTTTGGAGCTAGATCAGATTCGGAGACTCAAGAATCGAATCGATTCCGGCGAGTTTCAACCTGGAAACAGCTTCAACGGCCATCCGAAGAAACCGACGAACAAGAAGATTTCTGGCAACAAACGTCCCTTGCCGTTGAATTCCACGGCAAAGGATTTGAAACGGTCGCATTCGGAGGTTGGGAACTTGATGAAGGGTTGTTCGCAGGTTTTGCAGAAACTGATGAAACACAAACATGGGTGGATCTTTAATGTTCCTGTCGATGTTGTCGGAATGGGTCTTCACGATTACCATGATATTATTAAGAAACCCATGGATCTGGGTACCGTGAAGTTGAATCTCTCCAAGAACTTGTACGCGAACCCTTCGGATTTTGCTTCTGATGTGAGATTAACGTTCAACAATGCACTGACCTATAACCCTAAGGGTCACGATGTGTACACCATGGCTGAGCAGCTTCTTGGGAGGTTTGAGGAGCTATATCGACCCTTGAACGATAAATTTGAAGATACGTTGAGACAGGAACGCAATTTCGATGAGGAATTGCAGGCTAGTTCGTGGAACCATGTTGAGCCAGAGAGGGTGAAGAAGAAAGAGAATCCAATCCCTCCTGCGAAATTGCAACAAGAGTCTCTGCAGCCACCTGCAAGTTCTTCAAACCCTCCATTGTTGCAGTCTCCGGTGCGAACACCGTCACCGATGCGAGCCCCTCCAGTGAAGCCTTTGAAGCAACCGAAGCCAAAGGCCAAGGACCCGAATAAGAGAGAGATGAGTCTTGAGGAGAAACACAAGTTGGGAATTGGGTTGCAGAGTTTGCCGCCAGAGAAAATGGAACAAGTGGTACAGATCATTAGGAAGAGGAATGGGCATTTGAAGCAAGATGGGGATGAGATTGAGCTTGATATTGAGGCTGTAGACACTGAGACTCTTTGGGAACTTGATCGATTGGTGACCAATTGGAAGAAGATGATGAGCAAGATTAAGCGGCAGGCACTAATGGGGAATATGAACAACAATGTGGCATCAAACAAAGGCAATGGGGAGTTACCTGCTACCGACAAGGTTGATACAACACCAGTTGAGGCGAAGAAGCCAAAAAAAGTGGAAGCAGGGGATGAGGATGTTGACATTGGGGACGAGATGCCAATGAGTATGTTTCCCCCTGTGGAGATTGAGAAAGATAAAGATGTCGTTGGAGGTCATGCAAGTAGTAGTTCTAGTAGCTCGAGCAGTTCAAGCAGTGATTCCTCGTCATCAAGTGATTCGGATTCGGGAAGTTCCTCGGGGAGTGATTCTGAAGCAGACAATGGGCACTTATAG 1581 0.4719 MASAVLANRNEPNWPQHKGGGAGFMGKVPFSNPNPNPKIGNSKRTQSASDDASSINRRSNDVNHSQYVTFNVASSTKRELNDLKNRLVLELDQIRRLKNRIDSGEFQPGNSFNGHPKKPTNKKISGNKRPLPLNSTAKDLKRSHSEVGNLMKGCSQVLQKLMKHKHGWIFNVPVDVVGMGLHDYHDIIKKPMDLGTVKLNLSKNLYANPSDFASDVRLTFNNALTYNPKGHDVYTMAEQLLGRFEELYRPLNDKFEDTLRQERNFDEELQASSWNHVEPERVKKKENPIPPAKLQQESLQPPASSSNPPLLQSPVRTPSPMRAPPVKPLKQPKPKAKDPNKREMSLEEKHKLGIGLQSLPPEKMEQVVQIIRKRNGHLKQDGDEIELDIEAVDTETLWELDRLVTNWKKMMSKIKRQALMGNMNNNVASNKGNGELPATDKVDTTPVEAKKPKKVEAGDEDVDIGDEMPMSMFPPVEIEKDKDVVGGHASSSSSSSSSSSSDSSSSSDSDSGSSSGSDSEADNGHL* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00349 526 MobiDBLite consensus disorder prediction 331 345 - -
Rops11g00349 526 PRINTS Bromodomain signature 181 197 IPR001487 GO:0005515
Rops11g00349 526 PRINTS Bromodomain signature 197 215 IPR001487 GO:0005515
Rops11g00349 526 PRINTS Bromodomain signature 215 234 IPR001487 GO:0005515
Rops11g00349 526 PRINTS Bromodomain signature 165 178 IPR001487 GO:0005515
Rops11g00349 526 MobiDBLite consensus disorder prediction 425 526 - -
Rops11g00349 526 MobiDBLite consensus disorder prediction 294 345 - -
Rops11g00349 526 Coils Coil 77 100 - -
Rops11g00349 526 MobiDBLite consensus disorder prediction 444 460 - -
Rops11g00349 526 MobiDBLite consensus disorder prediction 34 60 - -
Rops11g00349 526 MobiDBLite consensus disorder prediction 313 330 - -
Rops11g00349 526 Pfam Bromodomain extra-terminal - transcription regulation 343 405 IPR027353 -
Rops11g00349 526 SUPERFAMILY Bromodomain 145 257 IPR036427 GO:0005515
Rops11g00349 526 ProSiteProfiles NET domain profile. 334 415 IPR027353 -
Rops11g00349 526 ProSiteProfiles Bromodomain profile. 162 234 IPR001487 GO:0005515
Rops11g00349 526 MobiDBLite consensus disorder prediction 487 526 - -
Rops11g00349 526 SMART bromo_6 143 253 IPR001487 GO:0005515
Rops11g00349 526 MobiDBLite consensus disorder prediction 102 135 - -
Rops11g00349 526 PANTHER OSJNBA0053K19.4 PROTEIN 57 519 - -
Rops11g00349 526 Pfam Bromodomain 154 238 IPR001487 GO:0005515
Rops11g00349 526 CDD Bromo_plant1 150 248 IPR037377 -
Rops11g00349 526 MobiDBLite consensus disorder prediction 104 120 - -
Rops11g00349 526 Gene3D - 115 269 IPR036427 GO:0005515
Rops11g00349 526 Gene3D - 337 414 IPR038336 -
Rops11g00349 526 MobiDBLite consensus disorder prediction 294 312 - -
Rops11g00349 526 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00349 Rops-Chr11 4798591 4801084 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00349 - - gmx:100802622 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00349 11 4798591 4801084 Rops11g00349 11 4798591 4801084 ECH