LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g00348	ATGGGAAGTAGTAGCAAGAAAAGGAAGGTTCAAGAAGAAACCAAAGACAACACCGATGGTTCCACCGCGCCATCTTCTTCTGTGAATCCAATGGAAAGCAAGAAGAAAAGGAAAGCCTTAGACAAGGAACGCCGCCGCGCCGAAGCCGGAGCCGGGGTTTTGGAGCCAAAACCTTTGGCTGAGTCATCGGAATCTCCGAGCACGAGTGGCGGTGGTCTTCCGGAGTTTCACATTGGAGTGTTCAAGGACTTGTCGGCGGTGGCTGAGTCGCTTAGGGAAACCGCCGTGAAACAAATGGTGATGGAGTTGAAGGAAGTTCAGAATGCTTATGATAAGCTTGAGGAGAATGAGAAAGAGGAGAGTGGTAATGGTGGTTTCAAGTTGGAAGCTGAGAAAGACGATGGATTGGATAACTGTGCACCATCTGTTCGATATGCTGTTCGTAGGCTTATTCGTGGTGTCTCCTCATCAAGAGAGTGTGCACGACAAGGTTTTGCTTTAGGTTTAACAGTTTTAGTTGGCACTATCCATAGCATCAGCGTTGAGTCATTTCTTAAACTTGTAGTAGATTCGTTGGAAGTAACTTCATCAATGAAGGGTCAGGAAGCAAAAGATTGTTTGTTGGGACGCTTATTTGCTTATGGTGCTCTGGCTCGATCAGGAAGACTTACACACGAATATAGTATGGATAAAAACACTCCATATATAAAAGAATTTATCGGTGTACTTATCTCTCTTGCAAATAGAAAGCGGTACTTGCAAGAGCCTGCTGTCTCAATAATTTTGGACTTGGTTGAAAAGTTGCCTGTTGATGTGGTGGTGAATCATGTTATTGAAGCTCCTGGGCTCCGGGAGTGGTTTGAAGCTGCTATAGAAGTAGGAAATCCTGATGCTTTGCACCTTGCTTTAAAAGTTCAAGAGAAGATATCTATTGACAGCTCCATATTTGGCAAACTACTGCCAAATCCATTCAACCCTAGCCAGCTTTTCTCCACTGATCACCTGTCCTCCCTGAGTAATTGCTTGAAGGAGTCAACTTTCTGTCGGCCTCGTGTTCATGGTGTCTGGCCTGTATTGGTAAATATTCTTTTACCTAATACTGTTTTGCAAGCAGAAGATGCTGCGTCAGCTTCAAATTCATTGAAAAAACACAAAAAGAGTAAAAAATCCAGCTCTTCTGATGAAGAAATTGGGAAGAATCTTCAGTCTTTTTGTGAAATAATTATTGAAGGATCCCTTCTCTTCTCATCCCATGACCGTAAGCACTTAGCTTTTGATGTTCTGTTTCTTCTTCTCCAAAAGCTGTCTGCTTCTTTAATTCCAGTTGTTCTATCGAGCAAAGTTGTTCAGTGCCTGATAGATATACTATCAACAAAGAACACGTGGCTGTATAAAGTTGCACAGAATTTTCTTAAACAGTTGTCAGATTGGGTGGGGGATGATGATGTCAGAAGAGTTGCTGTTATAGTGGCTCTACAGAAGCACAGCAATGGAAAATTTGATCGTGTCACACGGACAAAACATGTTAAAGATTTCATGTCACAGTTCAAAACAGAACCTGGTTGCATGCTTTTTATTCAGAACTTGATGAACCTGTTTGTGGATGAAGGTAATACCTTGGAGGAACCTTCAGACCAGAGTCAAACAACAGATGAAAATTCTGAAATAGGCTCCATTGAGGATAAGGATTCTCCTAGGATCAATGGGAATTCTGACTTCTTGAAAAGTTGGGTTATAGAATCCCTTCCCAATATTCTAAAACACTCAAAGATGGATCATGAAGAGATGTCCCGAGTACAGAAAGAAATCATGAAATTTATGGCTGTTCAGGGTCTGTTCACTGCATCTCTTGGCACTGAAGTGACTTCATTTGAGTTACAGGAGAAATTCAGATGGCCAAAATCTCCCACATCAAATGCTCTTTGCAAGATGTGTATTGACCAGCTGCAGTTGTTATTGGCAAATGCTCAGAAGGGAGAGGGCTCGCGTCCTTTGGCTAATGGCCTTGAGCCAAATGATCTTGGTTCTTATTTCATGAAGTTCTTCGGTACATTACGCAACATTCCTTCAGTTTCCCTCTTCCGATCTTTAGATGATGAGGATGAAAAAGCAGTAAAAAATCTGCAAGCAATAGAAGCCAGATTATCCAGAGAGGAAAGGAGCCATGGCTGTGGTACCGATGCTAATAGATTGCATGCACTGAGATACTTGCTTATCCAGTTGCTGCTGCAAGTGCTTCTTCATCCAGGGGAGTACTCAGAAGCTGCATCTGAACTCATCATCTGTTGTAAGAAAGCTTTTTCTGCTTCGGATCTTCCTGAGTTCTCTGGAGAAGATGATTTGGAGGATGATGACGCTCCTGAATTAATGGACGTTCTTGTGGATACATTACTCTCTTTGCTTCCACAGTCATCAGCTCCTATGCGGTCTTCTATTGAGCAGGTATTTAAATTCTTTTGTGATGATATCACCGATGATGGACTGATGCGGATGTTGCGGGTCATTAAGAAAAATCTAAAACCTGCAAGACATCCGGATGCAGCAACTGCAGATGACAGTGACGAAGATGATGACGACTTTATCAATATTGAAGATGAAGAAATTGATCAAGCTGAGACAGGTGAAACAGGTGAGAGTGATGAGCAGACAGATGACTCTGAGTCAGTAGTTGAGGTAGAGGAAACTGGTCATGGCCATCCTGAAGCCTCCGATGATTCTGATAGTGGGATGGATGATGATGCGATGTTCAGGATGGATACATATCTTGCCCAGATTTTCAAAGAGAAGAAAAATCAGGCTGGAAGTGAAACTGCTCATTCCCAGCTTGTGCTGTTCAAACTTCGCATCCTTTCATTGTTGGAAATTTTCCTTCATGAAAATCCAGGTAAGCCTCAGGTTCTTATGGTGTACTCAAATTTGGCTCAGACTTTTGTTAATCCACATACAGCAGAAGTTAGCGAGCAGCTTGGACAGCGTATATGGGGAATATTACAAAAGCAAATATTTAAGGCAAAGGATTATCCCAGGGGTGATGGAGTACAGATATCCACTCTTGAATCTCTGTTGGAAAGAAATTTGAAATTAGCTTCCAAACCATTCAAAAAACAAAAGGCTGCATCTAACCCATCAAAGCAACCAGCTGCCTGGAACCGACAGAAAATGGTTTCTTCCCTTGCCCAAACATCAACCTTCTGGATTTTGAAAATTATAGATTCAAGAAATTTCTCAGAGTCCAAACTACAAAGGATTGTTCAAATTTTCCGGGATGTATTGGTAGAGTATTTTGACAATAAGAAGTCTCAGATCAAATCTGGATTTTTAAAAGAAATATTTCGAAGGCGACCATGGATTGGACATGCTGTGTTTGGCTTTATTTTGGAGAGATGTGGAAGTGCCAAGTCAGACTTTCGAAGGGTGGAAGCACTTGATCTGGTAATGGAAATATGGAAGTCACTTGCAACAGGTAGTAGTGATGATCAGAATGCATCGAAAAAGATTCTTAAAAGCAATTTGGATAAACTCTCTAATCTAATGAAAGAATTGGTGGCAAATATGCCCAGCAAACCAGCAAGAAGGACAGAGGTACAAAAGTTTTGTGTCAGGGCCTTTGAGATCTTGTCTAAGCTTAACCTCAGCAAGTCTTTTGTTAAAACTTTGGCTCCTGATGCTCAAGCTGCCCTTGAGGCACAATTTGGTGAGCAATTCATTCGTTTGAAGAAGCTGGAAAAATAA	3732	0.4169	MGSSSKKRKVQEETKDNTDGSTAPSSSVNPMESKKKRKALDKERRRAEAGAGVLEPKPLAESSESPSTSGGGLPEFHIGVFKDLSAVAESLRETAVKQMVMELKEVQNAYDKLEENEKEESGNGGFKLEAEKDDGLDNCAPSVRYAVRRLIRGVSSSRECARQGFALGLTVLVGTIHSISVESFLKLVVDSLEVTSSMKGQEAKDCLLGRLFAYGALARSGRLTHEYSMDKNTPYIKEFIGVLISLANRKRYLQEPAVSIILDLVEKLPVDVVVNHVIEAPGLREWFEAAIEVGNPDALHLALKVQEKISIDSSIFGKLLPNPFNPSQLFSTDHLSSLSNCLKESTFCRPRVHGVWPVLVNILLPNTVLQAEDAASASNSLKKHKKSKKSSSSDEEIGKNLQSFCEIIIEGSLLFSSHDRKHLAFDVLFLLLQKLSASLIPVVLSSKVVQCLIDILSTKNTWLYKVAQNFLKQLSDWVGDDDVRRVAVIVALQKHSNGKFDRVTRTKHVKDFMSQFKTEPGCMLFIQNLMNLFVDEGNTLEEPSDQSQTTDENSEIGSIEDKDSPRINGNSDFLKSWVIESLPNILKHSKMDHEEMSRVQKEIMKFMAVQGLFTASLGTEVTSFELQEKFRWPKSPTSNALCKMCIDQLQLLLANAQKGEGSRPLANGLEPNDLGSYFMKFFGTLRNIPSVSLFRSLDDEDEKAVKNLQAIEARLSREERSHGCGTDANRLHALRYLLIQLLLQVLLHPGEYSEAASELIICCKKAFSASDLPEFSGEDDLEDDDAPELMDVLVDTLLSLLPQSSAPMRSSIEQVFKFFCDDITDDGLMRMLRVIKKNLKPARHPDAATADDSDEDDDDFINIEDEEIDQAETGETGESDEQTDDSESVVEVEETGHGHPEASDDSDSGMDDDAMFRMDTYLAQIFKEKKNQAGSETAHSQLVLFKLRILSLLEIFLHENPGKPQVLMVYSNLAQTFVNPHTAEVSEQLGQRIWGILQKQIFKAKDYPRGDGVQISTLESLLERNLKLASKPFKKQKAASNPSKQPAAWNRQKMVSSLAQTSTFWILKIIDSRNFSESKLQRIVQIFRDVLVEYFDNKKSQIKSGFLKEIFRRRPWIGHAVFGFILERCGSAKSDFRRVEALDLVMEIWKSLATGSSDDQNASKKILKSNLDKLSNLMKELVANMPSKPARRTEVQKFCVRAFEILSKLNLSKSFVKTLAPDAQAALEAQFGEQFIRLKKLEK*	1244

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops11g00348	1243	MobiDBLite	consensus disorder prediction	866	912	-	-
	Rops11g00348	1243	MobiDBLite	consensus disorder prediction	1	74	-	-
	Rops11g00348	1243	Pfam	DNA polymerase phi	145	957	IPR007015	GO:0003677\|GO:0005730\|GO:0006355\|GO:0008134
	Rops11g00348	1243	MobiDBLite	consensus disorder prediction	540	554	-	-
	Rops11g00348	1243	Coils	Coil	96	123	-	-
	Rops11g00348	1243	MobiDBLite	consensus disorder prediction	31	51	-	-
	Rops11g00348	1243	MobiDBLite	consensus disorder prediction	890	912	-	-
	Rops11g00348	1243	SUPERFAMILY	ARM repeat	142	1000	IPR016024	-
	Rops11g00348	1243	MobiDBLite	consensus disorder prediction	540	567	-	-
	Rops11g00348	1243	MobiDBLite	consensus disorder prediction	1	16	-	-
	Rops11g00348	1243	MobiDBLite	consensus disorder prediction	866	889	-	-
	Rops11g00348	1243	Coils	Coil	1164	1184	-	-
	Rops11g00348	1243	PANTHER	MYB-BINDING PROTEIN 1A FAMILY MEMBER	61	1240	IPR007015	GO:0003677\|GO:0005730\|GO:0006355\|GO:0008134

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops11g00348	Rops-Chr11	4790580	4798109	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g00348	K02331		-	gmx:100787296	1939.08

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops11g00348	11	4790580	4798109	Rops11g00348	11	4790580	4798109	ECH