LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops10g02645	ATGCCTGTCTTGGCTTGTTGCGTGGATGCTGCAGCGCCTCCCGGCTACGCATTCGCCGGTGACATCTCTTTCCCGGCGCAGGTCGATTTTTCCGGAGTGACTCCGGCCACGACTGACGACAACCAATGGTCTCCGTCCCTCTCCGCCGCCCTCTACAACATCGACGGATGGGGTGATCCCTACTTCGGCGTGAACTCCGCCGGAAACATCTCTGTGCGGCCACATGGTTCGGAGACGCTGTCTCACAAGGAGATTGATTTTCTGAAGGTGGTGAAGAAAGCATCCGACCCCATATCTTGCGGTGGTCTCGGCCTTCAGCTTCCTCTCATTGCTCGCTTCCCTGAGGTTTTGAAAAACCGTTTGGAGTCCCTTCAATTGGCATTCGATTACGCAATCGAATCCGAGGGATACGAGTCTCATTACCAGGGGGTTTACCCTGTGAAATGCAACCAGGACCGGTTCGTTGTGGAAGATATTGTCAAATTCGGTTCTTCGTTCCGGTTCGGTTTGGAAGCAGGGTCCAAGCCAGAACTTCTCTTAGCCATGAGTTGTTTATGCAAAGGAAACCCCGAAGCGCTTGTCATTTGCAATGGCTTCAAAGACGCAGAGTATATTTCCCTCGCTTTGGTAGCGAGGAAGCTGGCGCTGCATACCGTGATTGTTCTGGAGCAGGAAGAAGAGCTTGATATGATCATTGATATGAGCAAGAAGCTCCGCATTCGACCCGTGATTGGCATGCGAGCGAAACTGAGAACCAAGCATTCTGGCCATTTCGGGTCGACTTCGGGTGAAAGAGGCAAGTTCGGGTTGACAACCTCTCAGGTTTTGAGGGTGGTGGAGAAGCTTGAACACGCTGCCATGCTGGATTGCCTGCAATTGCTGCATTTTCATATAGGTTCTCAAATTCCTTCCACTACGTTGCTGGCAGATGGTGTTGGTGAAGCTGCACAGATCTATTGTGAACTGGTTCGGCTTGGGGCTAACATGCGGGTCATCGACATTGGAGGTGGCCTTGGCATTGATTACGACGGTTCAAAATCCAGCGACTCTGATGCCTCTGTCGGGTATGGTCTCCAAGAATATGCAGCGGCGGTTGTTCACGCAGTTCAATATGTCTGCAACCGAAGGTCTGTTAAGCACCCTATAATCTGCAGCGAGAGTGGCAGGGCCCTTGTGTCTCATCATTCTGTCTTGGTTTTTGAAGCTGTTGGTGCTTCCAGCAATGGTGCGCCCCCTGCATTTTCCACCCTTGCTCTGCAGTATTTGGTTGAGGGGCTTTCGGAGGATGCTCGTGCTGATTATCACAACCTCTCTGATGCCGCGATTCGAGGAGATTATGATACCTGCTTGCTCTATACAGAGGAAATGAAACGGAGATGCCTTGAGGAATTCAAGCAAGGGTGTTTGGGGATGGAACAGCTTGCCGCCGTGGATGGGTTGTGTGATTTGGTGAAGAAGGCGGTGGGGGCGTCGGAACCTGTTTCGAGGTACCACGTGAACCTCTCTGTGTTCACGTCCATTCCTGATGTGTGGAGCATTGATCAGGTGTTTCCAATTGTCCCCATTCATCGCCTGGATGAAAAGCCTTCTGTGAGGGGGATTCTCTCGGACTTGACATGCGACAGTGATGGGAAGATAGATAGATTCATAAATGGAGAGTCGAGCTTGCCGCTCCATGAGTTGGAAGGTGGAAGTGGAAGGAAAGGGAGGTACTATTTGGGAATGTTCTTGGGTGGGGCTTACGAGGAGGCGCTCGGTGGATACCACAACTTGTTTGGTGGCCCCAGTGTGGTTCGGGTGTCACAGAGTGATGGTCCACATGGCTTTGCGGTGACTCATGCGGTGGCAGGGCAGTCATGTGGAGACGTCCTTCGAGTGATGCAGCATCAGCCTGAGCTTATGTTTGAGACCCTCAAGCACCGCCTGCACGAGTTTGTACACGATGATGCCAATGCTGTGGCACTGGCCAATGGCCTCGCACGCTCCTTCAACAACATGCCTTATCTGGTTGTAGCTGCCGCTGACGATGCTGATTCTGTTGCTCCTGTGGGAGATGATGAGGAGCACGACCACTGGTCTTATTGCCGTGCTTGA	2094	0.5234	MPVLACCVDAAAPPGYAFAGDISFPAQVDFSGVTPATTDDNQWSPSLSAALYNIDGWGDPYFGVNSAGNISVRPHGSETLSHKEIDFLKVVKKASDPISCGGLGLQLPLIARFPEVLKNRLESLQLAFDYAIESEGYESHYQGVYPVKCNQDRFVVEDIVKFGSSFRFGLEAGSKPELLLAMSCLCKGNPEALVICNGFKDAEYISLALVARKLALHTVIVLEQEEELDMIIDMSKKLRIRPVIGMRAKLRTKHSGHFGSTSGERGKFGLTTSQVLRVVEKLEHAAMLDCLQLLHFHIGSQIPSTTLLADGVGEAAQIYCELVRLGANMRVIDIGGGLGIDYDGSKSSDSDASVGYGLQEYAAAVVHAVQYVCNRRSVKHPIICSESGRALVSHHSVLVFEAVGASSNGAPPAFSTLALQYLVEGLSEDARADYHNLSDAAIRGDYDTCLLYTEEMKRRCLEEFKQGCLGMEQLAAVDGLCDLVKKAVGASEPVSRYHVNLSVFTSIPDVWSIDQVFPIVPIHRLDEKPSVRGILSDLTCDSDGKIDRFINGESSLPLHELEGGSGRKGRYYLGMFLGGAYEEALGGYHNLFGGPSVVRVSQSDGPHGFAVTHAVAGQSCGDVLRVMQHQPELMFETLKHRLHEFVHDDANAVALANGLARSFNNMPYLVVAAADDADSVAPVGDDEEHDHWSYCRA*	698

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Rops10g02645	697	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	288	301	IPR000183	GO:0003824
Rops10g02645	697	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	145	163	IPR000183	GO:0003824
Rops10g02645	697	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	579	592	IPR000183	GO:0003824
Rops10g02645	697	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	383	402	IPR000183	GO:0003824
Rops10g02645	697	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	169	181	IPR000183	GO:0003824
Rops10g02645	697	Gene3D	Alanine racemase	114	395	IPR029066	-
Rops10g02645	697	SUPERFAMILY	PLP-binding barrel	113	395	IPR029066	-
Rops10g02645	697	PRINTS	Arginine decarboxylase signature	579	600	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Rops10g02645	697	PRINTS	Arginine decarboxylase signature	137	151	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Rops10g02645	697	PRINTS	Arginine decarboxylase signature	500	521	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Rops10g02645	697	PRINTS	Arginine decarboxylase signature	245	267	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Rops10g02645	697	PRINTS	Arginine decarboxylase signature	525	550	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Rops10g02645	697	PRINTS	Arginine decarboxylase signature	373	390	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Rops10g02645	697	PRINTS	Arginine decarboxylase signature	221	242	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Rops10g02645	697	PRINTS	Arginine decarboxylase signature	113	128	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Rops10g02645	697	PRINTS	Arginine decarboxylase signature	195	210	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Rops10g02645	697	PIRSF	ARGDC	31	671	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Rops10g02645	697	Gene3D	-	412	493	-	-
Rops10g02645	697	CDD	PLPDE_III_ADC	104	600	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Rops10g02645	697	PANTHER	ARGININE DECARBOXYLASE	2	670	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Rops10g02645	697	FunFam	Biosynthetic arginine decarboxylase	114	395	-	-
Rops10g02645	697	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.	145	163	IPR022653	-
Rops10g02645	697	SUPERFAMILY	Alanine racemase C-terminal domain-like	492	602	IPR009006	GO:0003824
Rops10g02645	697	Pfam	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	140	393	IPR022644	GO:0003824
Rops10g02645	697	NCBIfam	arginine decarboxylase	43	669	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Rops10g02645	697	Gene3D	Lyase, Ornithine Decarboxylase; Chain A, domain 1	52	602	IPR009006	GO:0003824
Rops10g02645	697	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 signature 2.	326	339	IPR022657	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops10g02645	Rops-Chr10	45828920	45831677	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops10g02645	K01583		-	gmx:100793552	1101.27

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops10g02645	10	45828920	45831677	Rops10g02645	10	45828920	45831677	ECH