Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02641 ATGGTGAATTCAGGTTCAGGAAGTGGGCACGATTATGGGGAGGCATTGTCAAAGGCGATTCTTTTCTTTGAGGGGCAACGATCGGGTTTTCTGCCAAATGACCAGAGACTCAAGTGGCGTGGCAATTCGGGTCTCAGTGACGGGTGGACTTATAACGTGGACCTCACCGGCGGGTACTATGACGCCGGAGATAACGTGAAATTCGGGTTTCCGATGGCATTCACGACGACAATGCTGTCGTGGAGTGTGATAGAGTTTGGGGACATGATGCCTCCCAATGAACTCAGAAACACTTTGGTTGCAATCCGTTGGGCTACTGATTACTTGCTCAAAACTGTTTCTCAACCCAACCGCATTTTCGTTCAGGTGGGTGATCCAATCTCAGACCACAACTGTTGGGAGAGGCCCGAAGACATGGACACAAACAGAACAGTGTACGCTGTTGATGCTCCAAACCCAGCTTCCGATGTCGCCGGTGAAACCGCGGCGGCATTTGCGGCTGCATCCATGGCATTCCGGTCATCGGATCCGGGTTATTCAGAAACCTTGCTACGAAATGCCGTTAAGACATTTCAATATGCAGATAACTACAGAGGTGCATACAGTGACAATGCTTATGTTAGGGATGGTGTCTGTCCATATTATTGTGATTTTGATGGATATCAGGACGAACTGTTATGGGGAGCCGCATGGCTAAGGAGGGCCACTCAAGATGATAATTTCCTCAACTACATTCAAACCAATGGCAAAACCCTTGGTGCAGAAGACAATATAAATGAGTTTGGTTGGGACAACAAGCATGCTGGCCTTAACGTTCTTGTCTCCAAGGAAGTCCTAGAAGGAAAGGTATACTCTCTTGACTCTTACAAGGCCTCGGCAGAGAGCTTCCTATGCACGCTGATACCTGAAACGTCAAGTTCACACATAGAGTACACTCCTGGTGGACTCATATACAGGCCTGGTGGCAGCAACTTACAGCATGCAACTTCAATTGCTTTCCTTGAGTTGGTCTATGCTAATTACCTATCTCGCACGACACAAGGCATCAATTGTGGGAATGTCTATGTCAGTGCACAAACACTTCGCCAGCGTGCTAAGAGGCAAGTTGATTACATTTTAGGTGATAATCCATTAGGTTTATCCTACATGGTTGGTTACAGCAACAATTACCCACAACGTATTCATCATCGTGGCTCGTCTTTACCCTCCATTAAGGACCATCCTCAACACATTGAGTGCAAAGAAGGTTCAATATATTTCAACTCAAATAATCCTAACCTTAATGTTCTCGTAGGAGCCATTGTGGGAGGACCTGGAGAAGATGATGTTTATGTGGATGACAGGGCTGATTTTAGGAAGTCCGAGCCAACCACATATATTAATGCTCCGTTTGTTGGGGTTTTAGCATACTTTGTTGCTAATCCCAATCCGTAA 1434 0.463 MVNSGSGSGHDYGEALSKAILFFEGQRSGFLPNDQRLKWRGNSGLSDGWTYNVDLTGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGDMMPPNELRNTLVAIRWATDYLLKTVSQPNRIFVQVGDPISDHNCWERPEDMDTNRTVYAVDAPNPASDVAGETAAAFAAASMAFRSSDPGYSETLLRNAVKTFQYADNYRGAYSDNAYVRDGVCPYYCDFDGYQDELLWGAAWLRRATQDDNFLNYIQTNGKTLGAEDNINEFGWDNKHAGLNVLVSKEVLEGKVYSLDSYKASAESFLCTLIPETSSSHIEYTPGGLIYRPGGSNLQHATSIAFLELVYANYLSRTTQGINCGNVYVSAQTLRQRAKRQVDYILGDNPLGLSYMVGYSNNYPQRIHHRGSSLPSIKDHPQHIECKEGSIYFNSNNPNLNVLVGAIVGGPGEDDVYVDDRADFRKSEPTTYINAPFVGVLAYFVANPNP* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02641 477 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 444 462 IPR033126 -
Rops10g02641 477 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 371 397 IPR018221 -
Rops10g02641 477 Gene3D - 9 475 IPR012341 GO:0005975
Rops10g02641 477 PANTHER ENDO-1,4-BETA-GLUCANASE 9 472 - -
Rops10g02641 477 FunFam Endoglucanase 8 476 - -
Rops10g02641 477 SUPERFAMILY Six-hairpin glycosidases 9 474 IPR008928 GO:0005975
Rops10g02641 477 Pfam Glycosyl hydrolase family 9 12 468 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02641 Rops-Chr10 45726669 45730397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02641 8 474 Glycoside Hydrolase AT1G70710 62.313 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02641 K01179 - gmx:100799911 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02641 10 45726669 45730397 Rops10g02641 10 45726669 45730397 ECH