Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02636 ATGAGTTCAGACAGCCGCAGCCGGAGCAGAAGCAGGAGCAGGAGCAGGAGCCCAATGGACCGTAAAATCCGCTCTGATCGTTTTACCTATCGTGATGCACCTTACAGGAGAGATTCACGTCGGGGTTTCAGCCGAGACAATTTGTGCAAGAACTGCAAGAGGCCTGGTCACTATGCTAGAGAATGCCCTAATGTCGCAATTTGCCACAATTGTGGTCTCCCTGGGCACATTGCTTCTGAATGCACCACGAAGTCGCTGTGCTGGAATTGTAAAGAACCTGGTCACATGGCCAGCAGTTGTCCAAATGAGGGCATTTGCCACACCTGTGGTAAAGCTGGACACCGTGCTAGGGAGTGCACAGCTCCTCCTATGCCTCCGGGGGACTTAAGGTTGTGCAACAACTGTTATAAGCAAGGCCACATTGCAGCTGAATGTACAAATGAGAAGGCATGCAACAACTGCAGGAAGACAGGCCACCTGGCACGTGATTGTCCGAATGATCCTATTTGCAACCTGTGCAATGTTTCTGGGCATGTGGCTAGACAGTGTCCAAAAGCCAACATTCTTGGAGACCGCAGTGGAGGTGGAGGTGGTGGTGGTGGTGGTGGTGGTGGTATTCGTGGCGGTGGTTACCGAGATGTTGTATGCAGGAACTGCCAGCAATTGGGTCACATGAGTAGGGATTGCATGGGGCCCTTGATGATTTGTCACAATTGTGGAGGTCGTGGTCACCTGGCATATGAGTGCCCTTCAGGTCGGTTTATGGATCGCTACCCCAGGAGGAATAAGAATTTGCTACCTGTAAGAGATTTGGTATTGTATGCATTATTACCTGGTATATGTATGAGGGCAGCGCTTTGGTATTTTCATCTTGTGGTTTTCGTGGAGGCAAGAGGGCTTTTGGAGGTTGCCGCTTGCTTGTTGTTTTCGACCAATGAGAAGGCATTTTGCAGGTTGGTGGTGATGATGGATAACATAAGCGATTTGAGCAGTAGATGGGAGGGTCAAATGGTTGGATCTATAGAGGAGGGATGTGATGATATTTCATTGGAGAATGAAAATGAAGATGTTGAATATGGTGGGGATGAGTATGGTGAATATATTGGTGATAATAAGGAAGCTGAAGAGCAACATGTGGAAGGTGTAATGTACAACAGTGGTGATGAAGAGGAGATTGTTGATAGTTATGAAGATGATGTAGAAAATGTGGAGCTGCAATATAGAGAGTTGGTTGTACTTGCTTCTAAAAATTTTGAGGATTTTTGTATTGAAAGGGGGAAGGCTAGGTTTGCTATTGAGGGATTAAGAGTGAAGATTGCTTCGATTGATTTGAATAGTAACTGTGGTAGTGGTAGTGAGCAACGTGGTATTAGGGATCCAGTACGAGTTGGTAGTAAAGGGAAAGGTGGTTCAGGTGCCTCATCTTCACGGCTGAAAAGTAACAGAAAGATAAGGTATTCTTTTTACAAATTGTATAGGCACAACAAGAAATCCTGCAAGGGTCATCGAAACTATGTTCGAACGATGGGAAGTTAG 1536 0.4629 MSSDSRSRSRSRSRSRSPMDRKIRSDRFTYRDAPYRRDSRRGFSRDNLCKNCKRPGHYARECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASSCPNEGICHTCGKAGHRARECTAPPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKANILGDRSGGGGGGGGGGGGIRGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRNKNLLPVRDLVLYALLPGICMRAALWYFHLVVFVEARGLLEVAACLLFSTNEKAFCRLVVMMDNISDLSSRWEGQMVGSIEEGCDDISLENENEDVEYGGDEYGEYIGDNKEAEEQHVEGVMYNSGDEEEIVDSYEDDVENVELQYRELVVLASKNFEDFCIERGKARFAIEGLRVKIASIDLNSNCGSGSEQRGIRDPVRVGSKGKGGSGASSSRLKSNRKIRYSFYKLYRHNKKSCKGHRNYVRTMGS* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02636 511 Pfam Zinc knuckle 87 102 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 Pfam Zinc knuckle 169 185 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 Pfam Zinc knuckle 68 82 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 Pfam Zinc knuckle 235 251 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 Pfam Zinc knuckle 215 229 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 Pfam Zinc knuckle 150 166 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 Pfam Zinc knuckle 48 64 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 Pfam Zinc knuckle 105 120 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 ProSiteProfiles Zinc finger CCHC-type profile. 170 185 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 PANTHER - 6 257 - -
Rops10g02636 511 Gene3D - 210 253 - -
Rops10g02636 511 SUPERFAMILY Retrovirus zinc finger-like domains 126 167 IPR036875 GO:0003676|GO:0008270
Rops10g02636 511 Gene3D - 6 83 - -
Rops10g02636 511 ProSiteProfiles Zinc finger CCHC-type profile. 87 102 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 ProSiteProfiles Zinc finger CCHC-type profile. 106 119 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 ProSiteProfiles Zinc finger CCHC-type profile. 132 147 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 SUPERFAMILY Retrovirus zinc finger-like domains 85 123 IPR036875 GO:0003676|GO:0008270
Rops10g02636 511 ProSiteProfiles Zinc finger CCHC-type profile. 216 229 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 MobiDBLite consensus disorder prediction 1 31 - -
Rops10g02636 511 ProSiteProfiles Zinc finger CCHC-type profile. 49 64 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 ProSiteProfiles Zinc finger CCHC-type profile. 151 166 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 SUPERFAMILY Retrovirus zinc finger-like domains 40 84 IPR036875 GO:0003676|GO:0008270
Rops10g02636 511 Coils Coil 393 413 - -
Rops10g02636 511 Gene3D - 105 148 - -
Rops10g02636 511 Gene3D - 149 200 - -
Rops10g02636 511 SUPERFAMILY Retrovirus zinc finger-like domains 208 253 IPR036875 GO:0003676|GO:0008270
Rops10g02636 511 ProSiteProfiles Zinc finger CCHC-type profile. 68 81 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 Gene3D - 84 104 - -
Rops10g02636 511 ProSiteProfiles Zinc finger CCHC-type profile. 236 251 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 SMART c2hcfinal6 67 83 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 SMART c2hcfinal6 131 147 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 SMART c2hcfinal6 235 251 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 SMART c2hcfinal6 105 121 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 SMART c2hcfinal6 169 185 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 SMART c2hcfinal6 150 166 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 SMART c2hcfinal6 215 231 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 SMART c2hcfinal6 48 64 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 SMART c2hcfinal6 86 102 IPR001878 GO:0003676|GO:0008270
Rops10g02636 511 MobiDBLite consensus disorder prediction 448 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02636 Rops-Chr10 45675938 45685705 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02636 K09250 - gmx:100775501 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02636 10 45675938 45685705 Rops10g02636 10 45675938 45685705 ECH