Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02612 ATGGCAAAAATAGAAGTAGAAAAAGGTGGTGGCCGGAAAGTGTTGGTCAGAGTGAAGGTGGCGGAGCCCGGTGACCTGTCATTGCACTTCACGTCCTCAATCACCGAGGGAACAGCATCGTTGCTATCTCTCGTGAAGACTTTCGATTCCGTTCTCGCCGTATACGAAGGTTTCTGCAATTTAAAGCAGGTTCATATAACACAAGAGCCTGATGAACTGTCATGCATCATTGAGCAAAAGCCATTAGACAATTGTGGCTATTCTGATAACCACAGGCAGAAAGTGTGTCAGCTTAATCACTGTACCAGTTTGTTGTCCTCCAGTGTAGATTCCCCATGGCAACAGATTTTATTATTGTTCGAGAGCTGTGGAATCTTGCGCAACAGTTTTTACTTTATAGGTCACAACCCTTTCAAAATTCCGTACTTCAGTTTGAGATCGATTCCACTGCACTTCCAAAAGAATTGGTTGTGCAGTGCTTGTTTTCGGACACCATCTTTAAGTGTCTGTCGGCTTTTGAGTTCTATTATGGCCAGTGATTCTTCTGTAACCTCCAATGGAGATGGCAACGGCAGTATCAACCCACTACCTAACCCGCAGAGGACTTACCAAGTGGTAGTGGCTGCAACACAAGATATGGGTATTGGTAAGGATGGAAAATTACCCTGGAGATTACCTACTGATCTCAAATTTTTTAAGGAAATCACTTCGACAACATCTGATTCTGAGAAGAAGAATGCCATTGTAATGGGAAGAAAAACATGGGAGAGTATCCCTCTTAAGTACAGGCCTCTTTCTGGTCGCCTTAATGTTGTTCTGACTCGCTCAGGTAGCTTTGATATTGCAACAGAAGAAAATGTTGTTATATGTGGGAGTATGTCTTCAGCATTGGAACTTTTAGCTGTTTCTCCTTACAGTCAGTCAATTGAGAAAGTATTTATTATAGGAGGCGGTCAGATATTTAGAGAGGCTCTCAATGCACCTGGATGTGAAGCTATCCACATCACAGAAATTCATGCAAGCATTGAGTGTGACACTTTTATGCCTCCAGTTGATTCCACTACATTTCAGCCATGGTACTCATCCTTTCCTAAGGTGGAAAACAACATCCGCCATTCTTTCACCACTTATGTGCGTGTCCAGAGTTCTGCAGCAGAGTCCCTGAGTCAGAATACGGATCCAGTTTTTGATGATTATTCAGATTCCATAAAATTTGAGGCTCAGGATTTTTCTTTTCTTCCTAAAATGATTTTTGAGAGACATGAGGAGTACATGTATCTTAGGCTGGTTCAAGAAATCATATCTGAAGGTACAACTAAGGATGATAGGACTGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGATGAGATTCAATCTGCGGAGAAGCTTTCCTCTTCTAACAACTAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATCACTGGATCAACAAATGCAAAGGTGTTACAGGAAAAAGGCATTCATATATGGGATGGCAATGCATCCAGAGAATACCTTGATAGTATTGGTTTGACTGAGAGGGAGGAGGGTGACTTGGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCTAGGTATATTGACATGCATAATGACTACTCTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTGACAAGATAAAGCATAATCCTCATGATCGTCAGATCATTCTCTCTGCTTGGAATCCATCTGATCTTAAATTGATGGCACTTCCACCCTGCCACATGTTTGCCCAGTTCTATGTATCAAATGGGGAGTTATCATGTCAAATGTACCAGCGATCTGCTGACATGGGCCTGGGTGTGCCATTTAATATTGCCTCTTATGCCCTCCTAACATGCATGATTGCTCATGTTTGTGAACTTGTTCCAGGTGATTTTATCCATGTAATTGGGGATGCACATGTTTACCAGAATCATGTGAAGCCTTTGCAGAAGCAGCTTGATAACCTGCCAAAACGTTTTCCAACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGTTATGATCCTCACAAGAAGATTGAGATGAAGATGGCTGTTTAA 2121 0.4182 MAKIEVEKGGGRKVLVRVKVAEPGDLSLHFTSSITEGTASLLSLVKTFDSVLAVYEGFCNLKQVHITQEPDELSCIIEQKPLDNCGYSDNHRQKVCQLNHCTSLLSSSVDSPWQQILLLFESCGILRNSFYFIGHNPFKIPYFSLRSIPLHFQKNWLCSACFRTPSLSVCRLLSSIMASDSSVTSNGDGNGSINPLPNPQRTYQVVVAATQDMGIGKDGKLPWRLPTDLKFFKEITSTTSDSEKKNAIVMGRKTWESIPLKYRPLSGRLNVVLTRSGSFDIATEENVVICGSMSSALELLAVSPYSQSIEKVFIIGGGQIFREALNAPGCEAIHITEIHASIECDTFMPPVDSTTFQPWYSSFPKVENNIRHSFTTYVRVQSSAAESLSQNTDPVFDDYSDSIKFEAQDFSFLPKMIFERHEEYMYLRLVQEIISEGTTKDDRTGTGTLSKFGCQMRFNLRRSFPLLTTKKVFWRGVVEELLWFITGSTNAKVLQEKGIHIWDGNASREYLDSIGLTEREEGDLGPVYGFQWRHFGARYIDMHNDYSGQGFDQLLDVIDKIKHNPHDRQIILSAWNPSDLKLMALPPCHMFAQFYVSNGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCELVPGDFIHVIGDAHVYQNHVKPLQKQLDNLPKRFPTLKINPKKKDIDSFVAADFKLIGYDPHKKIEMKMAV* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02612 706 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 415 706 IPR036926 -
Rops10g02612 706 Hamap Thymidylate synthase [thyA]. 423 706 IPR000398 GO:0004799|GO:0006231
Rops10g02612 706 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 214 236 IPR017925 GO:0004146
Rops10g02612 706 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 184 380 - -
Rops10g02612 706 PRINTS Thymidylate synthase family signature 557 576 IPR000398 GO:0004799|GO:0006231
Rops10g02612 706 PRINTS Thymidylate synthase family signature 639 656 IPR000398 GO:0004799|GO:0006231
Rops10g02612 706 PRINTS Thymidylate synthase family signature 464 485 IPR000398 GO:0004799|GO:0006231
Rops10g02612 706 PRINTS Thymidylate synthase family signature 583 598 IPR000398 GO:0004799|GO:0006231
Rops10g02612 706 PRINTS Thymidylate synthase family signature 601 627 IPR000398 GO:0004799|GO:0006231
Rops10g02612 706 CDD TS_Pyrimidine_HMase 426 659 IPR023451 -
Rops10g02612 706 SUPERFAMILY Dihydrofolate reductase-like 197 379 IPR024072 -
Rops10g02612 706 Pfam Thymidylate synthase 425 706 IPR023451 -
Rops10g02612 706 FunFam Possible thymidylate synthase 417 706 - -
Rops10g02612 706 Pfam Dihydrofolate reductase 204 379 IPR001796 GO:0004146|GO:0046654
Rops10g02612 706 ProSitePatterns Thymidylate synthase active site. 568 596 IPR020940 GO:0004799|GO:0006231
Rops10g02612 706 Gene3D Dihydrofolate Reductase, subunit A 190 382 IPR024072 -
Rops10g02612 706 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 410 706 IPR036926 -
Rops10g02612 706 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 202 379 IPR001796 GO:0004146|GO:0046654
Rops10g02612 706 CDD DHFR 206 378 IPR001796 GO:0004146|GO:0046654
Rops10g02612 706 PANTHER THYMIDYLATE SYNTHASE 1 225 706 IPR045097 GO:0016741
Rops10g02612 706 NCBIfam thymidylate synthase 425 706 IPR000398 GO:0004799|GO:0006231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02612 Rops-Chr10 45277394 45297973 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02612 K13998 - gmx:547833 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02612 10 45277394 45297973 Rops10g02612 10 45277394 45297973 ECH