Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02599 ATGAGTTCCCCTCCCACCACCACCACCACCACCACCACCACCTCCCATTTGCAGAGTGTAAAACTCAGGTATGTCAAACTGGGTTACCATTACTTGATCACACACTTGTGGACCTTCTGTTTGGTACCCCTAATACCTATAATCATCATTGAAGCATCTCAGTTAAAGGCAGATGATATTCACCGTCTCTGGCTCCACCTTCAGTACAACCTCCTCAGCATCACCATCTTCTCTACCACCCTCGTTTTGGGACTCACTCTCTACATAATTACTCGTCCAAGATCCATTTACCTTGTGGACTACTCTTGTTATCGACCCCCTAACCATCTCAGTGTCAAGTTCCACCAGTTCATGGAACACTCAAGGCTCACAGGGGACTTCAATGACTCCTCCCTCGAGTTTCAGCGCAAGATTCTAGAACGTTCTGGTCTTGGTGAAGAAACTTACGTCCCTGAAGCCATGAGTTACGTCCCACCAAGGCCTTCCTTGGCTGCTGCAAGAGAAGAGGCAGAGCAGGTTATGTTTGGTGCATTGGATAATCTGTTTTCCAATACCAATATCAAACCTAAGGACATTGGAATCCTTGTTGTCAATTGTAGCTTGTTCAATCCAACACCTTCACTTTCTGCTATGATAGTCAACAAGTACAAGCTGAGGAGTAATATTAAAAGCTTCAACTTGGGTGGTATGGGTTGCAGTGCTGGTGTCTTAGCTATTGATCTGGCTAAAGACATGCTTCAGGTTCAAAGGAACACTTATGCTGTTGTGGTCAGCACTGAGAATATTACTCAAAATTGGTACATTGGGAACAAGAAGTCCATGTTGATACCCAATTGTTTGTTCCGAGTAGGTGGGGCTGCAGTTTTGCTTTCCAACAAGGCTTCTGATAGGAGAAGAGCAAAGTACAGGCTTGTTCATGTGGTGAGAACTCATAAAGGGGCAGAAGATAAGGCATTTAGGTGTGTTTATCAGGAACAGGATGACGTTGGCAAAACGGGAGTGTCTTTGTCCAAAGATCTCATGGCTATTGCTGGGGATGCTCTTAAGACTAATATCACTACATTGGGTCCCCTTGTCCTACCCGCAAGTGAGCAACTTCTCTTCTTTGTTACTTTGGTGGCTAAGAAGCTATTCAATGCGAAAGTGAAGCCTTATATCCCGGATTTCAAGCTTGCTTTTGATCATTTTTTCATACATGCTGGTGGGAGGGCTGTGATTGATGAACTTGAGAAGAACCTGCAGCTTTTGCCTATGCATGTTGAGGCATCTAGGATGACATTACACAGGTTTGGGAACACTTCATCGAGCTCAATTTGGTATGAATTGGCTTACACAGAGGCAAAGGGTAGGATGAGAAAAGGTCATAGAGTTTGGCAAATTGCATTTGGCAGTGGGTTTAAGTGTAACAGTGCAGTGTGGGAAGCCCTCAGACATGTCAAGCCCTCACCCAAGAGTCCTTGGGAAGATTGCATTGATAGGTACCCGGTTCAGATTGTTACATAG 1503 0.4484 MSSPPTTTTTTTTTSHLQSVKLRYVKLGYHYLITHLWTFCLVPLIPIIIIEASQLKADDIHRLWLHLQYNLLSITIFSTTLVLGLTLYIITRPRSIYLVDYSCYRPPNHLSVKFHQFMEHSRLTGDFNDSSLEFQRKILERSGLGEETYVPEAMSYVPPRPSLAAAREEAEQVMFGALDNLFSNTNIKPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRSNIKSFNLGGMGCSAGVLAIDLAKDMLQVQRNTYAVVVSTENITQNWYIGNKKSMLIPNCLFRVGGAAVLLSNKASDRRRAKYRLVHVVRTHKGAEDKAFRCVYQEQDDVGKTGVSLSKDLMAIAGDALKTNITTLGPLVLPASEQLLFFVTLVAKKLFNAKVKPYIPDFKLAFDHFFIHAGGRAVIDELEKNLQLLPMHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRKGHRVWQIAFGSGFKCNSAVWEALRHVKPSPKSPWEDCIDRYPVQIVT* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02599 500 PANTHER 3-KETOACYL-COA SYNTHASE 67 497 IPR012392 GO:0006633|GO:0016020|GO:0016747
Rops10g02599 500 SUPERFAMILY Thiolase-like 83 300 IPR016039 GO:0016746
Rops10g02599 500 CDD CHS_like 78 473 - -
Rops10g02599 500 PIRSF Very_long_ch_3-ktacl-CoA_syn 15 500 IPR012392 GO:0006633|GO:0016020|GO:0016747
Rops10g02599 500 FunFam 3-ketoacyl-CoA synthase 106 475 - -
Rops10g02599 500 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 393 474 IPR013747 -
Rops10g02599 500 Pfam FAE1/Type III polyketide synthase-like protein 89 377 IPR013601 GO:0006633|GO:0016020|GO:0016747
Rops10g02599 500 Gene3D - 109 475 IPR016039 GO:0016746
Rops10g02599 500 SUPERFAMILY Thiolase-like 304 477 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02599 Rops-Chr10 45080564 45080767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02599 17 498 Miscellaneous Gene Families AT1G19440 82.573 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02599 K15397 - cave:132190210 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02599 10 45080564 45080767 Rops10g02599 10 45080564 45080767 ECH