Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02594 ATGGCTACACCTTCGCAGCCTTCAATTCTCCTATGCTTTTCTCTATTCGCTATCACTCTCTGCTTTGCTGAATCGCAATCCTTCATCGGAGTAAACTACGGCCAGGTAGCCGACAACCTTCCGCCGCCGGAAGCCACGGCCAAGCTCCTCCCATCCACCACCATCGGAAAAATCCGTCTTTACGGCGCCGATCCGGGGATCATCAAAGCCCTGGAAAATTCCGGCGTCGGAATCGTCATCGGAGCCGCGAACGGCGACATTCCGAGTCTAGCATCCGATCCCAACGCGGCGACTCAGTGGGTTAACACGAACGTGTTGCCTTACTACCCAGCCAGTAACATCACTCTCATCACCGTCGGCAACGAGGTTTTAACCTCCGGCGACCAGGGCCTTGTCTCACAGCTTGTGCCAGCAATTCGAAATGTCCAAAGTGCCCTCAGCTCCGCCTCGCTCGGCGGCAAGATCAAGGTCTCGACGGTGCACTCCATGGCCGTGTTGACTCAGTCGGATCCACCGTCAACCGGGTCGTTCAACCCGGAGCTTCAAGACACACTGAAACAGTTGCTGGCGTTTCAGAAGGATAACAGATCACCCTTTACCATCAATCCCTACCCGTTTTTCGCTTACCAGACCGACCCGAGACCCGAAACGCTCGCATTCTGTCTCTTCCGGCCTAATTCGGGTCGGGTCGACTCCGGTAACGGGAAGCTTTACACCAACATGTTCGATGCTCAGGTTGATGCTGTACATTCTGCTTTGAGTGCTATGGGTTTTCAGGACATTGAGATTGTGGTTGCTGAGACAGGATGGCCCTCTCGAGGGGACAGCAATGAAGTAGGACCCAGTGTTGAAAATGCCAAGGCCTATAATGGGAACCTGATTGCTCATCTTAGATCATTGGTTGGTACCCCTTTGATGCCTGGGAAGTCTGTGGACACTTACATTTTTGCACTCTATGATGAGGATTTGAAACCTGGCCCAGGATCTGAACGTGCTTTTGGGCTGTTCAAAACTGATCTTAGCATGTCTTACGATGTTGGCTTAGCCAAGTCTAGCCAGCAGACTCCAACAACACCAGTTACTCCAGCACCTGTTACTGCAGCCGGATGGTGTGTTCCAAAAGCAGGTGTCTCTGATGCTCAGTTGCAGGCCAATATTGACTATGCATGTAGCCAAGGCATAGACTGTGGGCCAATACAACCAGGGGGTGCTTGTTTTGCACCTAACACAGTAGCATCCCATGCTGCCTTCGCAATGAATCTCTACTACCAAACGTTTGGAAGAAATCAATGGAACTGTGATTTCTCTCAAACAGCAACGCTGACATCCCAAAATCCAAGTTACAATGCTTGCATTTATGCTGGTGGGAGTACCTGA 1377 0.5149 MATPSQPSILLCFSLFAITLCFAESQSFIGVNYGQVADNLPPPEATAKLLPSTTIGKIRLYGADPGIIKALENSGVGIVIGAANGDIPSLASDPNAATQWVNTNVLPYYPASNITLITVGNEVLTSGDQGLVSQLVPAIRNVQSALSSASLGGKIKVSTVHSMAVLTQSDPPSTGSFNPELQDTLKQLLAFQKDNRSPFTINPYPFFAYQTDPRPETLAFCLFRPNSGRVDSGNGKLYTNMFDAQVDAVHSALSAMGFQDIEIVVAETGWPSRGDSNEVGPSVENAKAYNGNLIAHLRSLVGTPLMPGKSVDTYIFALYDEDLKPGPGSERAFGLFKTDLSMSYDVGLAKSSQQTPTTPVTPAPVTAAGWCVPKAGVSDAQLQANIDYACSQGIDCGPIQPGGACFAPNTVASHAAFAMNLYYQTFGRNQWNCDFSQTATLTSQNPSYNACIYAGGST* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02594 458 FunFam Glucan endo-1,3-beta-glucosidase 14 27 354 - -
Rops10g02594 458 SUPERFAMILY (Trans)glycosidases 29 346 IPR017853 -
Rops10g02594 458 Gene3D - 364 454 - -
Rops10g02594 458 FunFam glucan endo-1,3-beta-glucosidase 7 365 454 - -
Rops10g02594 458 Gene3D Glycosidases 28 355 - -
Rops10g02594 458 ProSitePatterns Glycosyl hydrolases family 17 signature. 261 274 IPR000490 GO:0004553|GO:0005975
Rops10g02594 458 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 19 442 IPR044965 GO:0004553|GO:0005975
Rops10g02594 458 Pfam X8 domain 370 440 IPR012946 -
Rops10g02594 458 Pfam Glycosyl hydrolases family 17 29 346 IPR000490 GO:0004553|GO:0005975
Rops10g02594 458 SMART X8_cls 369 453 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02594 Rops-Chr10 44997570 45000606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02594 23 453 Miscellaneous Gene Families AT2G16230 68.056 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02594 - - gmx:100778892 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02594 10 44997570 45000606 Rops10g02594 10 44997570 45000606 ECH