Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02550 ATGGCAGGACCAAACATGGATCAGTTCGAAGCGTATTTCAGAAGAGCAGATTTAGATGGAGATGGAAGAATCAGTGGAGCTGAAGCTGTTTCTTTCTTTCAGGGATCCAATTTGCCCAAACACGTTCTCGCTCAGATTTGGATGTTTGCTGATCAGGCCAAAACTGGTTTCCTTGGGCGGAATGAGTTTTATAATGCTCTGAGATTAGTAACTGTGGCTCAGAGTAAGCGAGATTTAACTCCTGATATTGTGAAAGCAGCGTTATATGGTCCTGCTGCTGCTAAAATCCCTGCACCGCAGATCAATCTTGCTGCTATACCTCCACCACACCCGAATTCGGCAGCCCCTGCACAGATGGGTGTATCTGCACCCCCATCGACTCAAAATTTTGCCTATAGAGGACAAGGGTTTGGGGGTTCTGTTGCAAACCCACAATATAATCCTTCCCAGCAGAGTATGACCATGAGACCACCTCAACCCATGCCTGCTGGTGGCGCACCCCATCCACCACAGGTTGTTGCAGGTCCGGATATTTCTAAAGTAGTTAACATGGCTGGCTACAATCTCTCAAATCCAAGCGCCTCAAATGATTGGAATAGTGGAAGGACTGGTATGGTTCCTCCCCGGCCTGTAGGAACCACTCAATCAGTTGGCTTACCATCATCAACACCACGCTCTCCAGTCTCACCAATGACCCAGTCAACAACTAATAACACTAAAGCATTAGCTGTTTCTGGAAATGGGTATTCTTCCAATTCAGTTTTGGGCAATGATTTATTCTCTGCTGCCTCATCCACACTGAAACAAGAACCTACTCGACAGAATTATTCCGTTAGCAGTCCACCTGCCTCATCAGCCATTGTTCCAGTTTCTACTGGTGCCCAACCCATGAGTAAGCATAGTTCACTTGATTCATTGCAGAGTGCATTCTCAATGCAGCCTACAAATAGTCAGTTTCAGCGGACACAATCTGCATCAAACATAAGCCAGCAAATCTCACCACCAGCTTCTTCTCCACATGCATCATCTGGGGCATCAGTTGGACTTGGAAATACTAATTCTGACAATTCACAGCCGCCTTGGCCAAAAATGAAGCCTTCTGATGTGCAGAAGTATACAAAGGTGTTTATGGAAGTTGACACTGATAGGGATGGAAAAATCACTGGGGAGCAGGCACGCAGTCTATTTTTGAGTTGGAGATTACCAATAGATGTCTTAAAGAAGGTATGGGACTTATCTGATCAGGATAATGATAGCATGCTTTCTTTGAAGGAGTTCTGCTTTGCTCTTTACTTGATGGAGCGGCATAGGGAAGGTTGTCCTCTTCCACAGTCTCTTCCAAGTAATGTAATGTATGACGAGACATTGCTGTCTATGACGGGGCATCCAAAAATTACTTATGAAAATGCAGCCTGGGGTTTTCAGCAGCAACAAGGGATGCCAGGTGCTCGGCCAGTGGCCCCAACAGCTGGTTCGAGGCCGTCAGTGCAAGGAACTTCTCCCCGAGCTGATGGCACCATGCAGCCCAATCAGCAAAAGGCAGGATCACCTGTGTTGGATGATTCCTTTTTGAATCGCACATATAATGGTGAGCAGAATATATTAAACTCAAAACCTCAAGAGGCAGAAACTGCAGGGAAAAAGGCTGAAGAAACACAGAATGTGATTTTGGATTCAAAAGAAAAGATTGAGTTATACCGCAACAAAATGCAGGAACTGGTTCTATATAAAAGCAGATGCGATAATCAACTAAATGAGATTACAGAAAGGGCAGCTGCAGATAAACGTGAGGCAGAATCATTGGGCAAGAAATATGAAGAGAAATACAAACAAGTAGCTGAAATAGCATCCAAATTAACTGTAGAAGAAGCTAAATTCCGTGATATACAGGAAAGGAAGGTGGAGTTGCAGCAAGCAATTGTCAAAATGGAACAAGGAGGCAGTGCAGATGGTATTCTTCAGGTCCGTGCTGAACGCATACAGTCTGATCTTGAGGAGTTATTTAAGGCTCTAGCTGAACGGTGTAAGAAACATGGGATAGATGTGAAGTCAATTACAATGGTTCAGCTTCCTGTTGGTTGGCAACCCGGAATTTCGGAGGGGGCAGCTCTTTGGGATGAAGATTGGGATAAATTTGAAGATGAAGGTTTTGCCAATGATCTCACTTTTGATACAAAAAATACATCTTCAAAACCAAAACCCGCATTCATTCATGGAGAACAAAATTTCTCTGATGATAATTCAGTTCATGGTTCACCTGTGAATGCAAATGGGAAGCAAGAAAATTCTACTCATGGCAATTATTCAGTTGAGGATGAATCTTCTTATGCACACAGTGAAGATGACTTCGCTAGAAGCCCTCGCGATAGCCCAGCTGGGAGGACTACAGTGGAAAGTCCTCAAGAATTTTCAAATGCTCATTTTGGAAAAAGTTTCGAAGCAGATGCAGAGACACATAGAAGTTTTGATGAATCGACCTGGGGTGCATTTGACAATAACGATGATGTGGACTCAGTGTGGGGTTTTAAAACTGATAATACCAAGGACTCTGAGTTGGAGCAGCAGAGAGATTTCTTTCAATCTGGTGATTTTGGTATAAACCCAGTTAGAACAGGATCTACACTTAGAGATGGCACGTTCCAGACAAAAGGCCCATTTACTTTTGATGATTCGGTGCCCGGAACTCCACTTTCCATGTTCGGCAACTCTCCAAGGTACAGTGAGGCAGGGGATCACTCCTTTGACATGTCAAGGTTTGATTCTTTCGGCATGCACGATAGTGGATATTCTGCACAACCAGAGAGGCTTACGAGATTTGATTCCATAAGTAGCAGCAAGGACTTTGGTTATAATCCTGAGAAGTTCTCAAGATTTGATTCTATAAGTAGCAGCAAGGACTTTGGTTACAATCCTGAGAAATTTTCAAGGTTTGATTCTATGAATAGCAGTAAAGATTTCGGCTACAATCCTTCGGGGATCACAAGGATTGATTCCATGAGTAGCAGCAAAGATTTCGGCTTCAGTCATCAGGGGCATGCAAGGTTTGACTCAATTAGTAGTTCCAAGGACTTAGGCTTCGGTGCTCCATTCTCTTTCGATGACTCTGATCCTTTCGGCTCCTCTGGCCCATTTAAGGTCTCTTCTGAGAATCAATCTCCGAAGAAAGGTTCTGATAATTGGAGTGCATTCTAG 3192 0.4389 MAGPNMDQFEAYFRRADLDGDGRISGAEAVSFFQGSNLPKHVLAQIWMFADQAKTGFLGRNEFYNALRLVTVAQSKRDLTPDIVKAALYGPAAAKIPAPQINLAAIPPPHPNSAAPAQMGVSAPPSTQNFAYRGQGFGGSVANPQYNPSQQSMTMRPPQPMPAGGAPHPPQVVAGPDISKVVNMAGYNLSNPSASNDWNSGRTGMVPPRPVGTTQSVGLPSSTPRSPVSPMTQSTTNNTKALAVSGNGYSSNSVLGNDLFSAASSTLKQEPTRQNYSVSSPPASSAIVPVSTGAQPMSKHSSLDSLQSAFSMQPTNSQFQRTQSASNISQQISPPASSPHASSGASVGLGNTNSDNSQPPWPKMKPSDVQKYTKVFMEVDTDRDGKITGEQARSLFLSWRLPIDVLKKVWDLSDQDNDSMLSLKEFCFALYLMERHREGCPLPQSLPSNVMYDETLLSMTGHPKITYENAAWGFQQQQGMPGARPVAPTAGSRPSVQGTSPRADGTMQPNQQKAGSPVLDDSFLNRTYNGEQNILNSKPQEAETAGKKAEETQNVILDSKEKIELYRNKMQELVLYKSRCDNQLNEITERAAADKREAESLGKKYEEKYKQVAEIASKLTVEEAKFRDIQERKVELQQAIVKMEQGGSADGILQVRAERIQSDLEELFKALAERCKKHGIDVKSITMVQLPVGWQPGISEGAALWDEDWDKFEDEGFANDLTFDTKNTSSKPKPAFIHGEQNFSDDNSVHGSPVNANGKQENSTHGNYSVEDESSYAHSEDDFARSPRDSPAGRTTVESPQEFSNAHFGKSFEADAETHRSFDESTWGAFDNNDDVDSVWGFKTDNTKDSELEQQRDFFQSGDFGINPVRTGSTLRDGTFQTKGPFTFDDSVPGTPLSMFGNSPRYSEAGDHSFDMSRFDSFGMHDSGYSAQPERLTRFDSISSSKDFGYNPEKFSRFDSISSSKDFGYNPEKFSRFDSMNSSKDFGYNPSGITRIDSMSSSKDFGFSHQGHARFDSISSSKDLGFGAPFSFDDSDPFGSSGPFKVSSENQSPKKGSDNWSAF* 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02550 1063 CDD EH 372 438 IPR000261 GO:0005515
Rops10g02550 1063 MobiDBLite consensus disorder prediction 492 519 - -
Rops10g02550 1063 PANTHER EH DOMAIN 3 941 - -
Rops10g02550 1063 Gene3D - 4 95 - -
Rops10g02550 1063 Pfam Cytoskeletal-regulatory complex EF hand 362 433 IPR000261 GO:0005515
Rops10g02550 1063 Coils Coil 619 639 - -
Rops10g02550 1063 MobiDBLite consensus disorder prediction 265 366 - -
Rops10g02550 1063 ProSiteProfiles EH domain profile. 368 451 IPR000261 GO:0005515
Rops10g02550 1063 MobiDBLite consensus disorder prediction 193 235 - -
Rops10g02550 1063 MobiDBLite consensus disorder prediction 723 773 - -
Rops10g02550 1063 ProSiteProfiles EF-hand calcium-binding domain profile. 401 436 IPR002048 GO:0005509
Rops10g02550 1063 MobiDBLite consensus disorder prediction 214 235 - -
Rops10g02550 1063 MobiDBLite consensus disorder prediction 477 519 - -
Rops10g02550 1063 SUPERFAMILY EF-hand 5 84 IPR011992 -
Rops10g02550 1063 Coils Coil 584 604 - -
Rops10g02550 1063 MobiDBLite consensus disorder prediction 1041 1063 - -
Rops10g02550 1063 Coils Coil 549 569 - -
Rops10g02550 1063 MobiDBLite consensus disorder prediction 774 788 - -
Rops10g02550 1063 MobiDBLite consensus disorder prediction 145 166 - -
Rops10g02550 1063 Gene3D - 350 453 - -
Rops10g02550 1063 MobiDBLite consensus disorder prediction 723 806 - -
Rops10g02550 1063 MobiDBLite consensus disorder prediction 265 363 - -
Rops10g02550 1063 Pfam EF hand 10 26 IPR002048 GO:0005509
Rops10g02550 1063 SUPERFAMILY EF-hand 356 451 IPR011992 -
Rops10g02550 1063 CDD EH 9 75 IPR000261 GO:0005515
Rops10g02550 1063 SMART efh_1 42 70 IPR002048 GO:0005509
Rops10g02550 1063 SMART efh_1 371 399 IPR002048 GO:0005509
Rops10g02550 1063 SMART efh_1 8 36 IPR002048 GO:0005509
Rops10g02550 1063 SMART efh_1 405 433 IPR002048 GO:0005509
Rops10g02550 1063 ProSiteProfiles EH domain profile. 5 95 IPR000261 GO:0005515
Rops10g02550 1063 SMART eh_3 1 93 IPR000261 GO:0005515
Rops10g02550 1063 SMART eh_3 361 456 IPR000261 GO:0005515
Rops10g02550 1063 MobiDBLite consensus disorder prediction 792 806 - -
Rops10g02550 1063 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02550 Rops-Chr10 44428655 44439773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02550 1 1063 EF-hand Containing Proteins AT1G20760 52.952 0.0 974
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02550 K12472 - gmx:100784075 1612.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02550 10 44428655 44439773 Rops10g02550 10 44428655 44439773 ECH