Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02541 ATGAACCTTCGGTTAGGGCTTTTCAGTTTGTTATCTCTGTTACAGGTTTGTCTAATTTTATCTTTAGTAGGAGCTGACAATTTGTCCGAAAGGTTTCTTTTGACATCCAATGCCAAAACACCGGGGGAAAGGCATTCTGAGAATTACTGTGCAATGTATGACATTTGTGGAAAGCGTAGTGATGGTAAAGTTGTGAACTGTCCATTTGGTTCCCCTGCTGTGAAGCCAGATGATTTGCTTTCATCAAAGATTCAAAGTTTGTGTCCAACAATTACTGGGAACATTTGTTGTACAGAAGCTCAGTTTGACACATTAAGGACGCAAGTGCAACAGGCAATTCCTTTTCTTGTAGGTTGTCCAGCATGTTTGAGAAACTTTTTGAATCTGTTCTGCGAGCTTACATGCTCCCCAAATCAGAGTTTATTTATCAATGTGACTTCAGTTGACAAGGTTGGTGGTAATTTGACAGTGGGTGGGATTGATTATTTTGTAACTGATGCTTTTGGTGAAGGGTTATATGAGTCCTGCAAGGATGTAAAGTTTGGCACCATGAATTCTCGAGCTATTGAATTTGTTGGTGCTGGTGCTCAAAATTTTAAAGAGTGGTTTGCTTTTATCGGTAGAAAAGCAGCCCCTGGTGGTCTTGGTTCACCATATGCGATTATGTTCCAGCCAAATGCAACCGAGTCATCTGGGATGAAACCTATGAATGTTTCAACTTATTCATGTGGTGATATTTCTCTTGGCTGTTCCTGTGGGGACTGTCCTTCATCTTCAGCATGCTCTAATTCTGTTTCAACTACTACCCATAAGAGTGATTCCTGCTCCATGAAAGTTGGGAATTTAATGGTGAAGTGTGTTGACTTGATTTTAGCAGTTTTATACATCATACTGCTTTGTGTGTTCTTGGGTTGGGGATTGTATCATCGGAAGAGGGAAATAAAGCCGACATATAGAACGAAATCAGTGTCTAATGTCATTGGTGGTGGTGTTCTGTATTCTCGTAATCAGGAGAAGGAAGAGAACCTCCCAATGCAGGTTCATATGATGGAAGATGTTCCATCAAACAGAAATGGAGTCCGGCTATCAGCTGTGCAAGGATACATGTCAAATTTTTACAGGAAATATGGATCATTTGTAGCTAGAAATCCGATTATGGTCTTGGCTTCATCTTTGGCTATAGTTTTTCTACTTTGTCTGGGTCTAATTCGATTCAAGGTTGAGACACGGCCTGAGAAACTCTGGGTAGGACCTGGGAGTAAAGCAGCACAAGAGAAGCAGTTTTTTGACAGCCATCTCGCTCCATTTTACAGAATTGAACAGATCATACTGGCAACAGTTCCAGATCATATGAATAGTACATCACCAAGAATTGTGTCAGAGGACAACATTAGGTTCCTATTTGAAATACAAAAGAAGGTTGATGCAATTCGTGCTAATTATTCTGGCTTGATGGTATCTCTCCAAGACATCTGTTTGAAGCCACTTGACAAAGATTGTGCCACTCAAAGCGTCCTGCAATACTTCAAAATGGACCCTGAAAAATTCGATGGTTATGGGGGAGTTGAGCATCTCTCTTACTGTTTTGAGCATTATTCCTCAGCAGATCGATGTATGAGTGCATTTAAGGCTCCTCTTGATCCAAGCACGGTCTTAGGAGGTTTTTCTGGGAATGACTATTCTGGGGCATCTGCATTTATTGTAACTTATCCGGTAAATAATGCTATTGATGAAGAAGGTAATGAAACCGCAAAGGCAGTTGCTTGGGAGAAGACCTTTATTCAGTTGGTGAAGGATGAGCTGTTACCAATGGTGCAATCAAGAAATTTGACACTTGCCTTTTCGTCTGAAAGCTCCATTGAGGAAGAGCTGAAAAGAGAAAGTACTGCAGATGCTATTACTATATTGGTTAGCTATCTTGTGATGTTTGCTTATATATCTCTTACTTTAGGGGATACACCCCATCCTTCTTCTTTCTATATTTCATCTAAGGTATTGCTTGGTCTTTCAGGAGTAATTCTTGTTATGCTGTCTGTTGTTGGATCAGTTGGAGTTTTTAGTGCCCTTGGTGTAAAATCTACCCTGATCATCATGGAAGTCATTCCGTTTCTTGTTCTAGCTGTTGGGGTGGATAATATGTGTATACTAGTTCATGCTGTGAAAAGGCAACAGCTGGAGTTGCCTTTAGAAATACGAATAAGCAATGCACTTGTGGAAGTTGGACCATCAATAACATTGGCTAGTCTATCAGAGGTTTTAGCATTTGCAGTTGGAAGCTTTATTTCCATGCCTGCATGCCGTGTCTTCTCCATGTTTGCAGCATTGGCTGTTCTTTTGGACTTTCTCCTGCAAGTTACTGCTTTCGTAGCTCTGATAGTTCTCGACTCATTGCGAGCAGAGGATAAGAGAGTTGATTGTTTTCCATGCATAAAAGTGCATTCTTTGCATGCAGACCCTGATAAAGGCATTGGACAAAGAAAACCTGGTTTATTGGCTCGATATATGAAGGAGGTTCATGCTCCGATTCTGAGTATTTGGGGAGTAAAAATAGTTGTCATTGCTATTTTTGTTGCATTTACATTGGCTAGCATCGCATTGAGCACTAGAATTGAACCTGGTTTAGAGCAGGAGATTGTTCTTCCCCGAGACTCATATCTTCAGGGGTATTTCAATAATGTTTCAGAATATCTCAGAATTGGGCCACCTTTGTATTTTGTTGTAAAGAACTATAACTACAGCTCAGAATCAACACATACAAATCAGCTTTGCTCCATTAGCCGATGCAATTCAGACTCTCTTTTAAATGAGATTGCTAGAGCGGCCCTAGTACCAGACACAAGTTATATTGCCAAGCCAGCTGCCTCATGGCTTGATGATTTTCTTGTGTGGGTATCTCCAGAGGCATTTGGGTGCTGCAGGAAGTTCACAAATGGGAGTTATTGCCCTCCTGATGATCAGCCTCCTTGCTGTGCTCCTGGGGAAGGCTCTTGTGTTTCCGTTGGAACATGTAAAGATTGCACAACGTGTTTCCATCACTCAGATCTCCGTAATGATCGTCCATCTACAACACAGTTTGGGGAGAAACTGCCATGGTTTCTTAGTGCTCTGCCATCCGCTGATTGTGCAAAAGGTGGTCATGGGGCTTACACCAGCAGTGTTGACTTGAAAGGCTATGACAGTGGCATTATTCAAGCATCATCCTTCCGTACATATCATACCCCACTCAACAAGCAGATTGACTATGTTAATTCCATGAGGGCTGCTCGAGAGTTCAGTTCAAGAGTTTCTGATTCTTTAAAGATTGAGATCTTCCCATATTCAGTGTTTTACATGTTTTTTGAACAATACCTTACTATATGGAAGACTGCACTGGTCAACCTTGCCATAGCTATCGGTGCAGTATTTATTGTGTGCTTGGTTATCACATGCAGTTTATGGAGTTCAGCAATCATTTTGTTGGTGTTGGCAATGATTGTTGTTGATCTTATGGGTGTGATGGCCATTCTAAATATCCAGTTGAATGCTGTCTCCGTGGTCAACCTTGTTATGTCAGTGGGCATTGCTGTCGAGTTTTGTGTGCATATGACTCATTCTTTCACTGTAACTAGTGGAGACAAAGATCAACGTGTTAACGAGGCTCTGGGTACAATGGGTGCTTCAGTCTTCAGTGGTATCACACTAACAAAGTTGGTTGGAGTTGTTGTTCTTTGCTTCTCAAGAACAGAAGTTTTTGTGATTTATTACTTTCAGATGTACTTGTCGTTAGTACTTCTTGGTTTTCTGCATGGACTTGTTTTCTTGCCGGTGGTATTAAGCATCTTTGGTCCACCTTCAAGATGTACAGTCAGTGAGCAAGGGGAAGATCGTTCATCAACTTCTTCATAG 3885 0.4118 MNLRLGLFSLLSLLQVCLILSLVGADNLSERFLLTSNAKTPGERHSENYCAMYDICGKRSDGKVVNCPFGSPAVKPDDLLSSKIQSLCPTITGNICCTEAQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVDKVGGNLTVGGIDYFVTDAFGEGLYESCKDVKFGTMNSRAIEFVGAGAQNFKEWFAFIGRKAAPGGLGSPYAIMFQPNATESSGMKPMNVSTYSCGDISLGCSCGDCPSSSACSNSVSTTTHKSDSCSMKVGNLMVKCVDLILAVLYIILLCVFLGWGLYHRKREIKPTYRTKSVSNVIGGGVLYSRNQEKEENLPMQVHMMEDVPSNRNGVRLSAVQGYMSNFYRKYGSFVARNPIMVLASSLAIVFLLCLGLIRFKVETRPEKLWVGPGSKAAQEKQFFDSHLAPFYRIEQIILATVPDHMNSTSPRIVSEDNIRFLFEIQKKVDAIRANYSGLMVSLQDICLKPLDKDCATQSVLQYFKMDPEKFDGYGGVEHLSYCFEHYSSADRCMSAFKAPLDPSTVLGGFSGNDYSGASAFIVTYPVNNAIDEEGNETAKAVAWEKTFIQLVKDELLPMVQSRNLTLAFSSESSIEEELKRESTADAITILVSYLVMFAYISLTLGDTPHPSSFYISSKVLLGLSGVILVMLSVVGSVGVFSALGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLEIRISNALVEVGPSITLASLSEVLAFAVGSFISMPACRVFSMFAALAVLLDFLLQVTAFVALIVLDSLRAEDKRVDCFPCIKVHSLHADPDKGIGQRKPGLLARYMKEVHAPILSIWGVKIVVIAIFVAFTLASIALSTRIEPGLEQEIVLPRDSYLQGYFNNVSEYLRIGPPLYFVVKNYNYSSESTHTNQLCSISRCNSDSLLNEIARAALVPDTSYIAKPAASWLDDFLVWVSPEAFGCCRKFTNGSYCPPDDQPPCCAPGEGSCVSVGTCKDCTTCFHHSDLRNDRPSTTQFGEKLPWFLSALPSADCAKGGHGAYTSSVDLKGYDSGIIQASSFRTYHTPLNKQIDYVNSMRAAREFSSRVSDSLKIEIFPYSVFYMFFEQYLTIWKTALVNLAIAIGAVFIVCLVITCSLWSSAIILLVLAMIVVDLMGVMAILNIQLNAVSVVNLVMSVGIAVEFCVHMTHSFTVTSGDKDQRVNEALGTMGASVFSGITLTKLVGVVVLCFSRTEVFVIYYFQMYLSLVLLGFLHGLVFLPVVLSIFGPPSRCTVSEQGEDRSSTSS* 1295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02541 1294 ProSiteProfiles Sterol-sensing domain (SSD) profile. 631 794 IPR000731 -
Rops10g02541 1294 FunFam NPC intracellular cholesterol transporter 1 588 805 - -
Rops10g02541 1294 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 40 1285 - -
Rops10g02541 1294 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1082 1279 - -
Rops10g02541 1294 NCBIfam Niemann-Pick C type protein family 50 1275 IPR004765 GO:0005319|GO:0016020
Rops10g02541 1294 Pfam Niemann-Pick C1 N terminus 48 282 IPR032190 -
Rops10g02541 1294 Gene3D Multidrug efflux transporter AcrB transmembrane domain 592 803 - -
Rops10g02541 1294 FunFam Putative Patched sphingolipid transporter 1088 1278 - -
Rops10g02541 1294 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1084 1275 - -
Rops10g02541 1294 Pfam Patched family 1058 1274 IPR003392 GO:0016020
Rops10g02541 1294 Pfam Patched family 563 909 IPR003392 GO:0016020
Rops10g02541 1294 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 608 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02541 Rops-Chr10 44261442 44278559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02541 44 1294 Miscellaneous Gene Families AT1G42470 73.541 0.0 1863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02541 K12385 - gmx:100813262 2262.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02541 10 44261442 44278559 Rops10g02541 10 44261442 44278559 ECH