Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02511 ATGCCTACACTTGTTCCTGAGTCATTCGAAGCCAATGACGCAGAGCCTTTGAGGCTGAAGAGCATTTGTGGTGCTTCAGGAGTGAAGGGCAAGCGAGTGACTGCATTATCCCCAGAAGATGACATCTCTGATTTCATTCAGTCAATGATTCAAGAGAACCCAGAAATGGAATCACCATTTTGTGTGCTTGATTTGGGGGTTGTCATGGACCTCATGGATGAGTGGACTAGCAAGCTTCCCACTGTTCAGCCTTTCTACGCAGTCAAGTGCAACCCTAACCTGTCCTTGGTTGGCACACTAGCAGCACTTGGCTCCAGTTTTGACTGTGCCAGCAAAGCCGAAATTGAAACTGTTTTGTCCCTTGGAGTCTCACCAGACCGAATTATCTATGCCAACCCATGCAAATCAGAGTCCCACATCAAATATGCTGCCAGTGTTGGTGTCAACGTGACAACCTATGACTCTGTTGAAGAGGTTGAAAAGATACGAAAATGGCACCCAAATTGTGAGTTGCTCCTCCGCATCAAACCTCTAGAAGACAGCGGAGCACGAGCATGTTTGGGCCTCAAATACGGTGCGCTTCCAGAAGAAATTCCAGAGCTGCTGCAAGCTGCTGACGTGGCAGGACTCAAGGTAACTGGCGTGTCTTTCCACATCGGTAGTAAAGGAGCTGACTCGAAAGCCTTCCATGGAGCCATCGAAGCTGCCAAGAGCGTCTTCGAAATGGCTTCCAATATGGGTATGCCCGGAATGCACATCCTTGACATTGGCGGCGGTTTCAATTCTGGTCCGGAATTTGATGCTGCTGCTTTGAAAGTCAACGCCGCAATTCAAACCCACTTCGGGAATGAAGAGGGTCTCGTGGTTATTGGCGAGCCAGGTCGTTACTTTGCTGAAACTGCTCTCACCATAGCCACCATAGTTATTGGGAAGCGTGTGAGAGGCGAGTTAAGGGAGTATTGGATCGACGATGGAATATACGGGAGTCTCAGTTGCATAATATTTGACTATGCAACCCTTACTTGCACACCACTTAGGTGTGCATCAAAACCTGAGAATCCCACGTGCAGAGACCCCAAGACCTACCCTTCCACCGTGTTCGGACCCACTTGCGATTCCATAGATACGATTCTCAGGGATTACCACCTCCCTGAACTGCAAGTGAACGACTGGCTTGTGTTTCCGAACGTGGGTGCTTATACCACGTCTTCTGTGACCAATTTCAATGGGTTTAGCACGTCAGCCACGAACGTTCACCTTGCATGTTCCAGTCCTGTCGTGCGAGAATAA 1290 0.4907 MPTLVPESFEANDAEPLRLKSICGASGVKGKRVTALSPEDDISDFIQSMIQENPEMESPFCVLDLGVVMDLMDEWTSKLPTVQPFYAVKCNPNLSLVGTLAALGSSFDCASKAEIETVLSLGVSPDRIIYANPCKSESHIKYAASVGVNVTTYDSVEEVEKIRKWHPNCELLLRIKPLEDSGARACLGLKYGALPEEIPELLQAADVAGLKVTGVSFHIGSKGADSKAFHGAIEAAKSVFEMASNMGMPGMHILDIGGGFNSGPEFDAAALKVNAAIQTHFGNEEGLVVIGEPGRYFAETALTIATIVIGKRVRGELREYWIDDGIYGSLSCIIFDYATLTCTPLRCASKPENPTCRDPKTYPSTVFGPTCDSIDTILRDYHLPELQVNDWLVFPNVGAYTTSSVTNFNGFSTSATNVHLACSSPVVRE* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02511 429 PRINTS Ornithine decarboxylase signature 58 82 IPR002433 GO:0006596
Rops10g02511 429 PRINTS Ornithine decarboxylase signature 365 375 IPR002433 GO:0006596
Rops10g02511 429 PRINTS Ornithine decarboxylase signature 128 152 IPR002433 GO:0006596
Rops10g02511 429 PRINTS Ornithine decarboxylase signature 324 337 IPR002433 GO:0006596
Rops10g02511 429 PRINTS Ornithine decarboxylase signature 385 398 IPR002433 GO:0006596
Rops10g02511 429 PRINTS Ornithine decarboxylase signature 84 111 IPR002433 GO:0006596
Rops10g02511 429 PRINTS Ornithine decarboxylase signature 158 180 IPR002433 GO:0006596
Rops10g02511 429 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 39 417 IPR002433 GO:0006596
Rops10g02511 429 Gene3D Alanine racemase 68 297 IPR029066 -
Rops10g02511 429 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 55 415 IPR009006 GO:0003824
Rops10g02511 429 FunFam Ornithine decarboxylase 68 297 - -
Rops10g02511 429 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 86 104 IPR000183 GO:0003824
Rops10g02511 429 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 398 411 IPR000183 GO:0003824
Rops10g02511 429 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 289 308 IPR000183 GO:0003824
Rops10g02511 429 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 106 118 IPR000183 GO:0003824
Rops10g02511 429 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 209 222 IPR000183 GO:0003824
Rops10g02511 429 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 86 104 IPR022653 -
Rops10g02511 429 SUPERFAMILY Alanine racemase C-terminal domain-like 282 416 IPR009006 GO:0003824
Rops10g02511 429 CDD PLPDE_III_ODC 57 416 - -
Rops10g02511 429 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 299 398 IPR022643 GO:0003824
Rops10g02511 429 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 69 298 IPR022644 GO:0003824
Rops10g02511 429 SUPERFAMILY PLP-binding barrel 64 299 IPR029066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02511 Rops-Chr10 43826426 43827715 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02511 K01581 - gmx:548088 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02511 10 43826426 43827715 Rops10g02511 10 43826426 43827715 ECH