Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02502 ATGTCGTTCCTCCAATCACGGGTACGCTTCCACCACTCTCTCTCATCCTTCTTACCACGCACTTTCAAACTATATTCTTCTTCTTCAGCTTTAGTTGCAGAACCTCATCTTGAACATGACACAAACGAGTCTCTCCAAAACACTAATTTATCTCCAGAAGAGACCCATATAGTCGACAAATTTCACACCGTGATTAAAGATCACTACCGCAAAAACCCTAACCCTAATGCCACTCCACCCTCACCCAATTTCACCATACCCGATCTCTCCATTGATTTTTCCAAAATCTCCACCTCTCACTCGATTTCCCCCTCCATCGCCTGCCGTGTGATTGAAAAATGCGGTGGGGTCCGCCATGGAATCCCCTTCCTTCAATCCCTTTCCTTCTTCAACTGGGTCACCACTCTCGAAGGCTTCCCCTCCTCGCCGGAACCCTACAAGGAGATGATTGACCTTGCCGGAAAGTTAAGACAATTCGATCTAGCATGGCACTTGATTAATTTGATGAAAGCTCGTGGCGTTGAAATAACCATTGAAACTTTCTCTGTTCTTGTTCGGCGCTATGTGAGAGCCGGATTGGCTGCGGAGGCGGTGCACGCTTTTAATCGTATGGAAGACTATGGTTGCATGCCTGATAAGGTTGCATTTTCGATTGTGATTAGTAGCCTATGTAGGAAGAGAAGGGCAAGTGAAGCTCAATCCTTTTTTGACAGTCTTAAGCATAGGTATGAGCCTGATGTCATAGTGTACACTAGCTTAGTTCATGGGTGGTGCCGGGCCGGTAATATATCGAAGGCTGAGGAGGTATTCAGGGATATAAAGATGGCTGGAATCAAGCCTAATGTTTATACTTACAGCATTGTGATTGACTCGCTATGTAGGTGTGGACAAATCACTCGTGCTCATGATGTTTTTGCCGAGATGATAGATGAAGGATGTGAGCCTAATGCGGTTACTTATAATAGTCTGATGCGGGTTCATGTGAAGGCTGGAAGGACTGAAAAGGTCTTGCAAGTTTACAATCAAATGAAGAGGCTCGGTTGTCCTGCTGATACAATTACCTATAATTTCCTGATTGAGAGTCATTGTAGAGATGAGAATCTCGAAGAAGCGGTGAAGGTTCTCAATTTGATGGTTAAGAAAGGGGTTGCTCCTAATGCTTCCACTTTCAATTCAATTTTTGGATGTATAGCTCAGTTGCATGATGTGAATGGTGCTCATCGGATGTATGCTAAAATGAAGGAACTGAAGTGCCAGCCCAATACATTGACTTATAATATACTGATGAGAATGTTTGTTGACTCAAAATCTACTGATATGGTTCTGAAATTGAAGAAGGAGATGGATGAGAATCTAGTTGAGCCTAATGTGAATACTTACCGAATTTTGATTTCATTGTTTTGTGACATGGGGCACTGGAACAATGCTTACAAGTTAATGAAGGAGATGGTTGAAGAAAAATGCTTAAAACCAAATCTAAATGTTTATGAAATGGTTCTAGAGCAGTTGAGGAAGGCTGGGCAGCTAAAAAAGCACGAAGAGTTGGTGGAAAAGATGGTTGCCAGGGGATTTGTCACTCGCCCCTTGTAG 1590 0.4314 MSFLQSRVRFHHSLSSFLPRTFKLYSSSSALVAEPHLEHDTNESLQNTNLSPEETHIVDKFHTVIKDHYRKNPNPNATPPSPNFTIPDLSIDFSKISTSHSISPSIACRVIEKCGGVRHGIPFLQSLSFFNWVTTLEGFPSSPEPYKEMIDLAGKLRQFDLAWHLINLMKARGVEITIETFSVLVRRYVRAGLAAEAVHAFNRMEDYGCMPDKVAFSIVISSLCRKRRASEAQSFFDSLKHRYEPDVIVYTSLVHGWCRAGNISKAEEVFRDIKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMIDEGCEPNAVTYNSLMRVHVKAGRTEKVLQVYNQMKRLGCPADTITYNFLIESHCRDENLEEAVKVLNLMVKKGVAPNASTFNSIFGCIAQLHDVNGAHRMYAKMKELKCQPNTLTYNILMRMFVDSKSTDMVLKLKKEMDENLVEPNVNTYRILISLFCDMGHWNNAYKLMKEMVEEKCLKPNLNVYEMVLEQLRKAGQLKKHEELVEKMVARGFVTRPL* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02502 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Rops10g02502 529 Gene3D Tetratricopeptide repeat domain 122 240 IPR011990 GO:0005515
Rops10g02502 529 Gene3D Tetratricopeptide repeat domain 241 311 IPR011990 GO:0005515
Rops10g02502 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 242 IPR002885 -
Rops10g02502 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Rops10g02502 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Rops10g02502 529 Gene3D Tetratricopeptide repeat domain 401 528 IPR011990 GO:0005515
Rops10g02502 529 Gene3D Tetratricopeptide repeat domain 312 400 IPR011990 GO:0005515
Rops10g02502 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Rops10g02502 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Rops10g02502 529 SUPERFAMILY TPR-like 234 446 IPR011990 GO:0005515
Rops10g02502 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Rops10g02502 529 Pfam PPR repeat family 420 468 IPR002885 -
Rops10g02502 529 Pfam PPR repeat family 351 396 IPR002885 -
Rops10g02502 529 Pfam PPR repeat family 245 294 IPR002885 -
Rops10g02502 529 Pfam PPR repeat family 184 225 IPR002885 -
Rops10g02502 529 PANTHER OS03G0856100 PROTEIN 122 392 - -
Rops10g02502 529 Pfam PPR repeat 318 348 IPR002885 -
Rops10g02502 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Rops10g02502 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Rops10g02502 529 NCBIfam pentatricopeptide repeat 424 456 IPR002885 -
Rops10g02502 529 NCBIfam pentatricopeptide repeat 180 212 IPR002885 -
Rops10g02502 529 NCBIfam pentatricopeptide repeat 353 387 IPR002885 -
Rops10g02502 529 NCBIfam pentatricopeptide repeat 459 492 IPR002885 -
Rops10g02502 529 NCBIfam pentatricopeptide repeat 389 422 IPR002885 -
Rops10g02502 529 NCBIfam pentatricopeptide repeat 283 317 IPR002885 -
Rops10g02502 529 NCBIfam pentatricopeptide repeat 248 282 IPR002885 -
Rops10g02502 529 NCBIfam pentatricopeptide repeat 318 351 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02502 Rops-Chr10 43673923 43676552 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02502 136 524 Glycosyltransferase AT1G05670 25.897 6.46e-49 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02502 - - gmx:100800850 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02502 10 43673923 43676552 Rops10g02502 10 43673923 43676552 ECH