Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02500 ATGCTATCGCTCCATTCGTGTGGATGTTATGTTCTCAGGGCAAAACCATTTCGATTCCACACTTCACCTTCCTTTTCACTCTCTTTCTCTGCTACGAACTATAAATTTTCTTCCCTCTTTTTCTCTGCTAAGAATTATAAATTTCGTTTCAGCACTGTAAACGCAAATCACTCGCTCTCCGATGTAGAGCAAAAATCAAATTATGCAGGTGTGCAGTTGGAGGAAATTGTTGATAACAGAATCAAATCTGGAAAACTTAGACTCGATAGTTGGATCTCTTCTCGTATCAACGGCATTAGTAGGGCTCGCGTGCAATCAAGTATTAAAGCTGGTCTCGTTCATGTCAATGGCCGTGTGGTTGATAAGGTTTCTTTCAATGTCAAAGCTGGGGATGAGATCAAGTGTACGATTGCAGAGGTGCAGCAGTTGAGGGCTGTGCCGGAAAATATACCTTTGAATATAGTTTATGAAGATGAGCATGTGCTAGTCATAAATAAACCTGCACACATGGTTGTGCATCCAGCACCGGGCAATACATCTGGGACACTTGTCAATGGCATTCTTCACCATTGCAACCTTCCAAATGTTGAGTTTTCTAAAGAGGAAGCTCTTTCAGATACAGAAGATTCTGATGATGAGTTCACTAGCTTCTGCTCCCAGCCAAGTTCTTGTGAAGGGTCTGTGACATCAATTCGCCCAGGGATTGTACACCGACTGGACAAAGGCACAAGTGGGTTACTCGTTGTTGCAAAGGATGAACATTCTCATATGAAATTGTCTGAACAATTCAAGCTACGTACTATCAAGAGGGTCTATGTTAGTCTCACTACTGGGGTACCCATTCCAGTTGCTGGGAAGGTCGAGGTTCCAGTTGGCCGTGATCTTAATAACCGGCTTCGTATGACCGCTGTAACAGGACCAGTTAATTCTAGAAAGGCCCGTCATGCTGCTAGTAGGTACAAAGTAACTGAGATACTAGCTGGGGGCAGTTGTGCATTGGTTGAATGGAAGTTGGAAACTGGACGCACTCATCAGATCCGTGCACATGCCAAGTATTTGGGTGTTCCTCTGCTAGGTGATGAGGTATACGGAGGGACAAAAAGCATGGCCTTGTCACTGCTACGGCCCCGAACACCTCCGAGTTTGCATGGTAAAATTGGGGAAATGGTTTCTCAGCTAGATAGGCCTTGCCTTCATGCTTTGACTCTCGGGTTTCAGCATCCCCATACGAGGGAGCAGGTACACTTTTCATGCGAACCCCCTGTAGACTTCTATGAGATTTTGAGCCAGCTTCGTAGAATTGGCAGTGAGAAGGTTTCTATGTCAAAGCCTTCAAATGTATAA 1344 0.4464 MLSLHSCGCYVLRAKPFRFHTSPSFSLSFSATNYKFSSLFFSAKNYKFRFSTVNANHSLSDVEQKSNYAGVQLEEIVDNRIKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVVDKVSFNVKAGDEIKCTIAEVQQLRAVPENIPLNIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKEEALSDTEDSDDEFTSFCSQPSSCEGSVTSIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKLRTIKRVYVSLTTGVPIPVAGKVEVPVGRDLNNRLRMTAVTGPVNSRKARHAASRYKVTEILAGGSCALVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLRPRTPPSLHGKIGEMVSQLDRPCLHALTLGFQHPHTREQVHFSCEPPVDFYEILSQLRRIGSEKVSMSKPSNV* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02500 447 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 90 427 - -
Rops10g02500 447 ProSiteProfiles S4 RNA-binding domain profile. 86 159 - -
Rops10g02500 447 SUPERFAMILY Alpha-L RNA-binding motif 85 173 - -
Rops10g02500 447 NCBIfam RluA family pseudouridine synthase 86 432 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Rops10g02500 447 Pfam S4 domain 87 133 IPR002942 GO:0003723
Rops10g02500 447 Pfam RNA pseudouridylate synthase 160 350 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Rops10g02500 447 CDD PseudoU_synth_RluA_like 161 405 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Rops10g02500 447 ProSitePatterns Rlu family of pseudouridine synthase signature. 236 250 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Rops10g02500 447 SMART s4_6 86 151 IPR002942 GO:0003723
Rops10g02500 447 SUPERFAMILY Pseudouridine synthase 146 432 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Rops10g02500 447 Gene3D Pseudouridine synthase 143 420 - -
Rops10g02500 447 Gene3D - 70 142 IPR036986 GO:0003723
Rops10g02500 447 CDD S4 87 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02500 Rops-Chr10 43646779 43656412 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02500 K06180 - gmx:100810383 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02500 10 43646779 43656412 Rops10g02500 10 43646779 43656412 ECH