Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02473 ATGGATCGATCAACACTATTTTTTTCATTTTTACTAACAGTTCATTTATTAGCATCAGTGGTAGTTTCAACAACGTTCACGATTATTAACAAATGCGACTACACAGTATGGCCAGGCATTCTTTCAAACGCTGGTGTTTCACCGCTTTCAATCACCGGTTTCGTTCTTCAAACCGGTGAGTCAAAAACCATAACCGCACCAACCTCTTGGGGAGGTCGTTTCTGGGGCCGCACCCTCTGCTCACAAGACTCCACAGGAAAGTTCACCTGCGTCACAGGTGATTGCGGCTCCGGCAAACTAGAATGTGCAGGCAGCGGAGCCATACCGCCGGCAACTTTAGCAGAATTCACTCTAGACGGCTACGGTGGTTTAGATTTCTTCGACGTTAGTTTGGTTGACGGTTATAACGTCCCTGTGCTGGTTGTTCCAGAAGGTGGCTCCGGCAATAACTGCACCAGCACGGGTTGTATTGAGGACCTGAACGGCGCGTGTCCTTCAGAGCTTAAGGTTATGAGCGTGGATGGGAAACGAAGCGTCGCGTGTAAAAGCGCGTGTGAGGCGTTTGGTTCGCCGCAATATTGTTGTAGCGGCGCGTATGGTTCACCCAACACTTGCAAGCCTTCTAGTTATTCTCAGATATTCAAGAACGCTTGCCCACGCGCTTATAGCTACGCGTATGATGATAAAACCAGCACGTTTACGTGTGCATCTGTTGCAGCTTACACTATCACTTTTTGTCCTTCCCCTAACGGTTACCCCAGTCAGAAAGCGTCGCAAGGGCAAGCTCCCAAATCGGATGGTAGTGGTTCTTCTTCTGCCTCACCACCGCAGCTTAAAAACGACACAATGGTGTATGAGGGTGACATGGATCAAAGTGAAATATCATGGTCTGCGTGTACTCATGTGAGGGAATCTCAAGCTATTGTCAGCATCACCACTGCTGCTATTTGGATTTTGTGTCAGCTCTTCTAA 972 0.4825 MDRSTLFFSFLLTVHLLASVVVSTTFTIINKCDYTVWPGILSNAGVSPLSITGFVLQTGESKTITAPTSWGGRFWGRTLCSQDSTGKFTCVTGDCGSGKLECAGSGAIPPATLAEFTLDGYGGLDFFDVSLVDGYNVPVLVVPEGGSGNNCTSTGCIEDLNGACPSELKVMSVDGKRSVACKSACEAFGSPQYCCSGAYGSPNTCKPSSYSQIFKNACPRAYSYAYDDKTSTFTCASVAAYTITFCPSPNGYPSQKASQGQAPKSDGSGSSSASPPQLKNDTMVYEGDMDQSEISWSACTHVRESQAIVSITTAAIWILCQLF* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02473 323 PIRSF PR5 1 286 IPR001938 -
Rops10g02473 323 ProSiteProfiles Thaumatin family profile. 23 247 IPR001938 -
Rops10g02473 323 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Rops10g02473 323 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Rops10g02473 323 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Rops10g02473 323 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Rops10g02473 323 SMART tha2 26 247 IPR001938 -
Rops10g02473 323 FunFam THAUMATIN-LIKE PROTEIN 1 24 247 - -
Rops10g02473 323 Gene3D Thaumatin 24 247 IPR037176 -
Rops10g02473 323 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Rops10g02473 323 MobiDBLite consensus disorder prediction 254 279 - -
Rops10g02473 323 PANTHER OS03G0233200 PROTEIN 14 247 IPR001938 -
Rops10g02473 323 Pfam Thaumatin family 30 247 IPR001938 -
Rops10g02473 323 CDD TLP-PA 25 246 - -
Rops10g02473 323 SUPERFAMILY Osmotin, thaumatin-like protein 24 248 IPR037176 -
Rops10g02473 323 MobiDBLite consensus disorder prediction 254 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02473 Rops-Chr10 43220506 43222583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02473 5 265 Receptor kinase-like Gene Family AT5G38280 53.383 1.48e-95 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02473 - - gmx:100795186 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02473 10 43220506 43222583 Rops10g02473 10 43220506 43222583 ECH