Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02459 ATGGGAGAAAAATCAGGGTCCAGAGGGTGCTGTGGTTGGTTTATAGCGTTTGTGGTTCTGGCTCTTGTTGTCGGTGCTGTCGTTTATACCGTTACGAAGAAAATTCATCACTCAGATTCCGATAAGCCTGCTCCGGTTCCTGGTCCTCCTGGTGCCATTGACCAAAAATATGCATCTGCTCTCAAAACTGCAATGCAATTCCTCGATATACAAAAATCTGGCAAGTTAGTTGACAACAAAATAAGTTGGAGAGGGGATTCAGCTCTTAAGGATGGAAGCCAAGTACACTTGGATCTATCGAAAGGAATGTATGATGCTGGGGATCATATGAAGTTTGGTTTTCCGATGGCTTTTACTGCCACGGTGTTATCATGGGCCATTCTGGAATATGGAGATCAAATGGATGCTGTTGGCCAGTTGGAACCTGCACAAGATTCCCTCAAGTGGATCACCGATTATCTCGTCCATGCTCACCCTTCTGATAATGTTCTTTACATTCAGGTAGGTGATCCTGTTGCAGATCACAAGTGTTGGGATAGACCTGAACACATAACTGAGGCACGGCCACTCACACAAGTGAACACTTCGTGTCCTGGATCAGATGTTGCAGCTGAAACTGCAGCAGCCATGGCCTCGGCATCATTGGTCTTTAAAAAGACTGATTCTACATATTCAAGCACTCTCCTCAAGCATGCAAAACAGTTGTTCACTTTTGCTGACAAAAATAGAGGATCTTATAGTGAGAATATACCTGAAGTCCAGACATATTATAACTCAACTGGATATGGTGATGAGCTTTTATGGGCAGCTAGCTGGCTTTATCATGCTACAGGTGATGATTCTTACCTTGAGTATGTGACTGGCCAAAATGGAGAAGACTATGCTCAATGGGGAAGCCCAACCTGGTTCAGTTGGGACAACAAGCTTGCTGGAACTCAGGTTTTGTTATCCAGATTAAGCTTCTTTAAGGCAAAGGACATTTCAAATTCACATGGCTCTGGCCTCCAAAATTACAGGAAAACAGCTGAGGCTGTCATGTGTGGCCTTCTTCCAGATTCTCCAACAGCCACAGAAAGCAGAACAGATAAGGGTCTTATATGGGTGAGCGAATGGAACTCTCTGCAGCATCCTGTTGCTTCTGCGTTCTTGGCTGCTCTTTACAGTGACTATATGCTTACCTCGCAGACACCAAAACTAAAATGTAATTCGGATTCCTTTACCCCATCAGATCTTCGAGACTTTGCCAAATCTCAGGCTGATTATGTTTTGGGCAAGAATCCCATGCATATGAGTTTTCTAGTGGGATATGGAGATAAATATCCACAATTCGTGCATCATAGGGGGGCTTCAATTCCTGCTAATGCGAAAACTGGTTGCAAGGATGGCTTCCAGTGGCTCGATTCATCTGATCCTAATCCCAACGTAGCTACTGGAGCACTTGTTGGTGGACCCTTCTTAAATGAGACTTACATTGATTCCAGGAACAATTCTATGCAAGCAGAACCAAGCACATATAACAGTGCTGTCATAGTCGGCCTCTTATCAAGTTTAGTCACTACATCTTCTGCCGTTAAATCCTTTACCTAA 1587 0.4398 MGEKSGSRGCCGWFIAFVVLALVVGAVVYTVTKKIHHSDSDKPAPVPGPPGAIDQKYASALKTAMQFLDIQKSGKLVDNKISWRGDSALKDGSQVHLDLSKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDAVGQLEPAQDSLKWITDYLVHAHPSDNVLYIQVGDPVADHKCWDRPEHITEARPLTQVNTSCPGSDVAAETAAAMASASLVFKKTDSTYSSTLLKHAKQLFTFADKNRGSYSENIPEVQTYYNSTGYGDELLWAASWLYHATGDDSYLEYVTGQNGEDYAQWGSPTWFSWDNKLAGTQVLLSRLSFFKAKDISNSHGSGLQNYRKTAEAVMCGLLPDSPTATESRTDKGLIWVSEWNSLQHPVASAFLAALYSDYMLTSQTPKLKCNSDSFTPSDLRDFAKSQADYVLGKNPMHMSFLVGYGDKYPQFVHHRGASIPANAKTGCKDGFQWLDSSDPNPNVATGALVGGPFLNETYIDSRNNSMQAEPSTYNSAVIVGLLSSLVTTSSAVKSFT* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02459 528 Gene3D - 54 521 IPR012341 GO:0005975
Rops10g02459 528 PANTHER ENDO-1,4-BETA-GLUCANASE 20 519 - -
Rops10g02459 528 SUPERFAMILY Six-hairpin glycosidases 55 520 IPR008928 GO:0005975
Rops10g02459 528 FunFam Endoglucanase 53 522 - -
Rops10g02459 528 Pfam Glycosyl hydrolase family 9 57 514 IPR001701 GO:0004553|GO:0005975
Rops10g02459 528 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 421 447 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02459 Rops-Chr10 43019473 43023675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02459 1 527 Glycoside Hydrolase AT1G75680 71.402 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02459 - - gmx:100820195 960.674
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02459 10 43019473 43023675 Rops10g02459 10 43019473 43023675 ECH