Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02448 ATGTCTGCATCGGAAGCGGAGAAGAAGGTGGAAGAAGAGAAGGAGAAGGAGAAGGAGGTTCCCAAAGGGGGAGAGCTCCTGTTCTGCGGTGCCACGTGTTGGGATATCGTTGGTCGGAAGAAAGGTTCCGTCGACGGTAACTTGGTCTCTCCCTCTCGCCTCCGTCCTCTCGTTGGTGTTGATATTCGCTACGTTGCCTCTGGTTGTGCATCTTGTCATTGCGTGGCATTGGATGTTGAAGGGCGTTGTTATACATGGGGTCGTAATGAGAAAGGGCAACTGGGTCATGGAGATACCATTCAGCGTGATAGGCCAACTGTGGTGTCTGAACTTTCCAAATACAAAGTTGTCAAAGCTGGATCTGGGAGGAGCCATACGGTTGTTGTTACTGAGGATGGAAATTCCTTAGCCTTTGGATGGAACAAACACGGACAGCTAGGTTCTGGTTCTGCGAGAAATGAAATTGAGTCATCTCCTGTTCGCTGTCTTGTGTCTGAAGTAACATATACTGCTTGTGGCGGTGACTTCACCGTGTGGTTATCTTCTGTTGAAGGAGCTTCTATACTGACTGCTGGGCTTCCACAGTATGGGCAGCTTGGGCATGGAACAGATAATGAGTATAATTCCAAAGACAGCTCTGTTAGATTGGTTTATGAAGCCCAGCCACGTCCTCGAGCAATTGCTACTCTTGCTGGGGAAACAATTGTCAAAGTGGCTTGTGGAACAAATCACACAGTGGCGGTGGATAAGAATGGCTATGTCTACACGTGGGGTTTTGGCGGTTATGGAAGGCTAGGACATAGGGAGCAGAAGGATGAATGGGTTCCACGTCGTGTTGATGTTTTCCAGAATAGAAATGTTTTGCCTCCTGATGCCATTATTTCTGCTGGTTCTGTGAATTCTGCATGTACTGCTGGTGGAGGGCAGTTATACATGTGGGGCAAAATAAAGAACACTGGTGATGACTGGATGTATCCTAAGCCTCTAATGGATTTAAGTGGTTGGAATATACGATGCATGGATTCAGGCAATATGCACCATTTTGTTGGGGCTGATTCCTCGTGCATAAGTTGGGGTCATGCTCAGCACGGAGAGCTGGGATATGGACCTACTGGACAGAAGTCTTCAGCTGTACCCAAGAAGGTGGATATACTTGAGGGTATGCACGTAATGGGTGTTGCTTGTGGTATGGGTCATTCCATGGTTGTTGTTGATAGAGCTAATGTTGGTGATAGACTTAACCAGCTTGATACATACGATGGCAAAGCTATTGGTGAAGGTAATGAGCCTGCAGACAAAACTCCAGTGCCTAAGCAAAAGCAGGCTGCGAAAAAGGGTGCAAAGGGAGGTGACAATTCAAAGAAGAGGAAAAAGTTAAAAGATTCATCTGACTCGGAAGAGGAAGAGAATGCCGAAGACAGTGACAACAGTGATGATCAAGTTAATGGTGAGGCTGAGGTGAAAAGGCCACGTGGTGGAAAAAGTTCTGGTAAAGGCCGAGGTAAGGCGGCATCTAAAAAGTCAGGTTCCGAGGGAAAAGGTTCTGGCCGAGGGCATGGTCGCACTTCAGCAAATAAGAGCAGTTCTAAATCCCCTCAAGTGAAATCATCTGGTAAGAGAGGAAGACCCCGTAAGGCATGA 1641 0.4735 MSASEAEKKVEEEKEKEKEVPKGGELLFCGATCWDIVGRKKGSVDGNLVSPSRLRPLVGVDIRYVASGCASCHCVALDVEGRCYTWGRNEKGQLGHGDTIQRDRPTVVSELSKYKVVKAGSGRSHTVVVTEDGNSLAFGWNKHGQLGSGSARNEIESSPVRCLVSEVTYTACGGDFTVWLSSVEGASILTAGLPQYGQLGHGTDNEYNSKDSSVRLVYEAQPRPRAIATLAGETIVKVACGTNHTVAVDKNGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQNRNVLPPDAIISAGSVNSACTAGGGQLYMWGKIKNTGDDWMYPKPLMDLSGWNIRCMDSGNMHHFVGADSSCISWGHAQHGELGYGPTGQKSSAVPKKVDILEGMHVMGVACGMGHSMVVVDRANVGDRLNQLDTYDGKAIGEGNEPADKTPVPKQKQAAKKGAKGGDNSKKRKKLKDSSDSEEEENAEDSDNSDDQVNGEAEVKRPRGGKSSGKGRGKAASKKSGSEGKGSGRGHGRTSANKSSSKSPQVKSSGKRGRPRKA* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02448 546 MobiDBLite consensus disorder prediction 419 546 - -
Rops10g02448 546 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 252 307 IPR000408 -
Rops10g02448 546 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 238 248 IPR000408 -
Rops10g02448 546 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 81 132 IPR000408 -
Rops10g02448 546 MobiDBLite consensus disorder prediction 520 536 - -
Rops10g02448 546 MobiDBLite consensus disorder prediction 444 465 - -
Rops10g02448 546 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 393 403 IPR000408 -
Rops10g02448 546 Gene3D - 3 214 IPR009091 -
Rops10g02448 546 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 353 406 IPR000408 -
Rops10g02448 546 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 133 183 IPR000408 -
Rops10g02448 546 Pfam Regulator of chromosome condensation (RCC1) repeat 357 403 IPR000408 -
Rops10g02448 546 Pfam Regulator of chromosome condensation (RCC1) repeat 189 248 IPR000408 -
Rops10g02448 546 Pfam Regulator of chromosome condensation (RCC1) repeat 251 289 IPR000408 -
Rops10g02448 546 Pfam Regulator of chromosome condensation (RCC1) repeat 80 129 IPR000408 -
Rops10g02448 546 Pfam Regulator of chromosome condensation (RCC1) repeat 132 178 IPR000408 -
Rops10g02448 546 PRINTS Chromosome condensation regulator RCC1 signature 254 268 IPR000408 -
Rops10g02448 546 PRINTS Chromosome condensation regulator RCC1 signature 82 98 IPR000408 -
Rops10g02448 546 PRINTS Chromosome condensation regulator RCC1 signature 116 129 IPR000408 -
Rops10g02448 546 PRINTS Chromosome condensation regulator RCC1 signature 238 254 IPR000408 -
Rops10g02448 546 PRINTS Chromosome condensation regulator RCC1 signature 135 151 IPR000408 -
Rops10g02448 546 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 186 251 IPR000408 -
Rops10g02448 546 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 119 129 IPR000408 -
Rops10g02448 546 PANTHER PROTEIN RCC2 6 521 IPR028641 -
Rops10g02448 546 SUPERFAMILY RCC1/BLIP-II 22 406 IPR009091 -
Rops10g02448 546 Gene3D - 215 415 IPR009091 -
Rops10g02448 546 MobiDBLite consensus disorder prediction 466 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02448 Rops-Chr10 42803256 42810399 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02448 - - gmx:100819842 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02448 10 42803256 42810399 Rops10g02448 10 42803256 42810399 ECH