Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02443 ATGAGCAAAAGACCACCACCTGATCCCGTGGCAGTGCTGCGAGGCCATCGTGCTTCCGTCATGGATATTTCTTTTCATCCCTCTAAGACCATACTATTCTCCGGTTCTGCTGATGGTGAACTGCGGATTTGGGATACCCTTCGGTATCAAACAGTGTCATCAGCATGGTTACATAGTGCCGCCCATGGGATTGTTGCTGTTGCCTGTTGTTCTTCTCTCGGAACCAATAAATTTGTCAGCCAGGGTAGGGATGGAACTGTGAAAGTTTGGGATTTTGATGATGCTGGTTTGTCCAGGGTTCCATCACTTACAATCAAGACGAACACTTACCACTTTTGCAAGCTTTCCACAGTGAAGAATCATTGTGCTCGGTTGAAAGAAGGGACAACATCCAAAAATGGGCCTAGAACAGAGCTAGGAGAAATGTATGATAGAGAAATTGTAGAGGTTAAGAGAGAAGGGGGTGATACCAATCAAAGTTGCTCTGAAAGCTTTGAAGAAAATACGTATAATGAAGGGCTACCGTATGTGGCCTTGTCAGGGGAGAACTCTTCTGAGGTTGAAATTTGGGATCTCAAATCGGCTGAAAGATTTGTACGACTCCCTTCAAACATTCCTAGTAACTCTTCAAGTGCTTGCAACAAAGATAGGGGGATGTGCATGGCGCTTCAATTGTTTTTACCATCTGAATCGCAGGGATTTTTAAATGTCTTGGCTGGATATGAAGACGGTTCCATGCTTTGGTGGGACGTACGGAATCCTGGAGTTCCAGTGAGTTCTGTAAAATTCCATTCAGAGCCAGTTCTGAGCATCTGTATTGATGAGTTTTGCAAGGGTGGTATCTCGGGAGCTGCAGATGAGAAGATTGTAATGTACAGCTTGGATCATTCTTCGGGTACATGTGTGGTCAATAAAGAAATCAAATTGGAGCGACCTGGCATCTCAAGCACCTCAATTCGGCCGGATGGAAAAATTGCTGCAACTGCTGGCTGGGACCACAGGGTAAGGATATATAATTACCGCAAAGGAAATGCTTTAGCTATACTAAAGTATCATCATGCCACGTGCAATGCTGTAACTTTTTCGTCTGATTGTAAGCTTATGGCCTCTGCATCCGAAGACACAACCGTGGCGCTCTGGGAATTGTATCCTAGAATATGA 1161 0.447 MSKRPPPDPVAVLRGHRASVMDISFHPSKTILFSGSADGELRIWDTLRYQTVSSAWLHSAAHGIVAVACCSSLGTNKFVSQGRDGTVKVWDFDDAGLSRVPSLTIKTNTYHFCKLSTVKNHCARLKEGTTSKNGPRTELGEMYDREIVEVKREGGDTNQSCSESFEENTYNEGLPYVALSGENSSEVEIWDLKSAERFVRLPSNIPSNSSSACNKDRGMCMALQLFLPSESQGFLNVLAGYEDGSMLWWDVRNPGVPVSSVKFHSEPVLSICIDEFCKGGISGAADEKIVMYSLDHSSGTCVVNKEIKLERPGISSTSIRPDGKIAATAGWDHRVRIYNYRKGNALAILKYHHATCNAVTFSSDCKLMASASEDTTVALWELYPRI* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02443 386 ProSitePatterns Trp-Asp (WD) repeats signature. 368 382 IPR019775 -
Rops10g02443 386 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 386 - -
Rops10g02443 386 Gene3D - 3 130 IPR015943 GO:0005515
Rops10g02443 386 ProSiteProfiles Trp-Asp (WD) repeats profile. 78 100 IPR001680 GO:0005515
Rops10g02443 386 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Rops10g02443 386 PRINTS G protein beta WD-40 repeat signature 368 382 IPR020472 -
Rops10g02443 386 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Rops10g02443 386 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Rops10g02443 386 SMART WD40_4 50 91 IPR001680 GO:0005515
Rops10g02443 386 SMART WD40_4 6 45 IPR001680 GO:0005515
Rops10g02443 386 SMART WD40_4 254 293 IPR001680 GO:0005515
Rops10g02443 386 SMART WD40_4 300 339 IPR001680 GO:0005515
Rops10g02443 386 SMART WD40_4 342 381 IPR001680 GO:0005515
Rops10g02443 386 Gene3D - 131 385 IPR015943 GO:0005515
Rops10g02443 386 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Rops10g02443 386 Pfam WD domain, G-beta repeat 346 380 IPR001680 GO:0005515
Rops10g02443 386 Pfam WD domain, G-beta repeat 314 339 IPR001680 GO:0005515
Rops10g02443 386 PANTHER TRANSDUCIN BETA-LIKE 3 4 382 - -
Rops10g02443 386 SUPERFAMILY WD40 repeat-like 4 381 IPR036322 GO:0005515
Rops10g02443 386 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Rops10g02443 386 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 382 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02443 Rops-Chr10 42732336 42743130 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02443 10 92 Miscellaneous Gene Families AT5G08390 31.325 4.97e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02443 K24770 - gmx:100800482 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02443 10 42732336 42743130 Rops10g02443 10 42732336 42743130 ECH