Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02420 ATGGACCTCGATCCTCGTCAATACGAAAACATCCCTGTAAATGATAATGACATCAACAATATTATTCTGTCATATCTTATACACAATTGCCACAAAGAATCAGTGGAGTCATTCATTGCTTGCACTGGGATGAAGCAACCAGCAGATTATTTGGAGGACATGGAGAAAAGGAAAAGAATCTTTCACTTTGCACTAGAGGGAAATGCACTTAAGGCTATTGAGCTTACTGAACAGCTGGCGCAGGATATTCTAGAGAACAATAAGGATTTGCAGTTTGATCTTCTAAGCCTTCATTTTGTTGAGCTTATCTGCTCTAGGAACTGCACAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGCCCTTTTGGAAAGGAACACAAATATATGGAGAAGCTTGAAGACTTTATGGCTCTTCTTGCTTATAAGGAGCCAGAGAAATCCCCGATGTTTCATCTCCTTAGCTTAGAGTATCGGCAACAGGTTGCTGATAGTTTGAATCGAGCTATTCTTGCACACTTGAACCTTCCTAGTTACACAGCAATGGAGAGGCTAATACAGCAGGCTACAGTGGTAAGACAATGCTTAAGTCAAGAAGCTGGCAAGGATGGTCCTCCACCATTTTCCTTGAAGGATTTTCTCAAAAGTTGA 648 0.412 MDLDPRQYENIPVNDNDINNIILSYLIHNCHKESVESFIACTGMKQPADYLEDMEKRKRIFHFALEGNALKAIELTEQLAQDILENNKDLQFDLLSLHFVELICSRNCTEALEFAQTKLSPFGKEHKYMEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAILAHLNLPSYTAMERLIQQATVVRQCLSQEAGKDGPPPFSLKDFLKS* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02420 215 Pfam CTLH/CRA C-terminal to LisH motif domain 54 192 IPR024964 -
Rops10g02420 215 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 53 110 IPR006595 -
Rops10g02420 215 SMART toby_final6 106 201 IPR013144 -
Rops10g02420 215 SMART ctlh 53 110 IPR006595 -
Rops10g02420 215 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Rops10g02420 215 PANTHER RAN BINDING PROTEIN 9-RELATED 7 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02420 Rops-Chr10 42407344 42410307 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02420 K23338 - gmx:100800484 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02420 10 42407344 42410307 Rops10g02420 10 42407344 42410307 ECH