Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02317 ATGGAGAACTCGGGGAATTTAGACGCGGCCATAGAGCACTTGTTAAATGCAGAGAAGCATGCGAGGCTCGCCGGCGATGTCGCCGCCATCAGAAACGCCGTCAGCGACATTTTACGATTATGCTTTGAAGCGCGTGCCTGGAAGACCCTCAATGACCAGATTGTTCTTTTGTCCAAACGACGTGGTCAGCTTAAGCAGGCTGTCACAGCAATGGTCCAGCAGGCTATGAATTATATTGATGAGACACCAGATCTTGAAACTCGTATAGAACTCATCAAAACCTTGAACAGTGTATCTGCCGGAAAGATATATGTTGAGATTGAGAGAGCTCGATTGATCAAGAAACTTGCAAAGATTAAGGAAGAACAAGGGCTTATAGCTGAAGCTGCTGATTTGATGCAAGAAGTTGCGGTGGAAACTTTTGGTGCCATGGCAAAAACTGAGAAAATAGCATTCATTCTTGAACAAGTTCGTTTGTGCCTAGACCGCCAAGATTATGTTCGTGCACAAATACTCTCAAGAAAAATTAGTACAAGAGTATTTGATGCTGATGTTTCAAAGGAAAAGAAAAAGCCTAAAGAAGGTGATAATGTTGTTGAAGATGCTCCTGCAGATATACCGTCTTTACCAGAGTTGAAGCGAATCTATTACGAACTAATGATTCGGTATTATTCCCATAAAAATGATTATCTTGAAATTTGCCGTTGCTACAAGGCAATTTATGAGATTCCATCTGTCAAAGAAAATCCTGCCGAGTGGATTCCTATCCTGCGGAAAATATGTTGGTACTTGGTTCTATCACCACATGATCCAATGCTATCTAGCCTTCTCAATTCCACGTTGGAGGATAAGAATCTGTCTGAGATTTCAAACTTTAAGTTACTGTTGAAACAGTTGGTCACTATGGAGGTTATCCAATGGACAACTCTTTGGGATGCATACAAGAATGAGTTTGAGAATGAGAAGAACATTGGAAAACCCTTGGGTGAAAAAGCAGCAGAAGATCTGAGGGAAAGAGTAATTGAACATAATATTCTTGTTGTATCAAAATACTATGCAAGGATTACTTTGAAGAGACTTGCGGAGCTTTTGTGCCTCAGTGTTCAGGAAGCTGAGAGGCATCTTTCAGATATGGTTGTGTCCAAGGCACTGGTTGCGAAGATTGATAGACCTATGGGAATAGTTTGTTTCCAAACAGCCAAGGATAGCAATGACATTCTTAACTCATGGGCAGCAAACTTGGAGAGACTGCTTGATCTTGTGGAGAAGAGCTGTCATCAAATACACAAGGAAACCATGGTGCATAAAGCTGCCTTGAAGGTGAACCCCAATATAGATGGTGATTTTGGACCGAAGATGCCTCATCAGGATGTTCATCTGAATTGTCGCTGA 1392 0.4167 MENSGNLDAAIEHLLNAEKHARLAGDVAAIRNAVSDILRLCFEARAWKTLNDQIVLLSKRRGQLKQAVTAMVQQAMNYIDETPDLETRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISTRVFDADVSKEKKKPKEGDNVVEDAPADIPSLPELKRIYYELMIRYYSHKNDYLEICRCYKAIYEIPSVKENPAEWIPILRKICWYLVLSPHDPMLSSLLNSTLEDKNLSEISNFKLLLKQLVTMEVIQWTTLWDAYKNEFENEKNIGKPLGEKAAEDLRERVIEHNILVVSKYYARITLKRLAELLCLSVQEAERHLSDMVVSKALVAKIDRPMGIVCFQTAKDSNDILNSWAANLERLLDLVEKSCHQIHKETMVHKAALKVNPNIDGDFGPKMPHQDVHLNCR* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02317 463 Pfam PCI domain 291 398 IPR000717 -
Rops10g02317 463 ProSiteProfiles PCI domain profile. 232 402 IPR000717 -
Rops10g02317 463 SUPERFAMILY "Winged helix" DNA-binding domain 327 407 IPR036390 -
Rops10g02317 463 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 3 435 IPR040134 -
Rops10g02317 463 Gene3D - 329 406 IPR036388 -
Rops10g02317 463 FunFam 26S proteasome non-ATPase regulatory subunit 12 328 406 - -
Rops10g02317 463 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 331 417 IPR000717 -
Rops10g02317 463 Pfam 26S proteasome regulatory subunit RPN5 C-terminal domain 404 436 IPR040896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02317 Rops-Chr10 40991261 40995921 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02317 K03035 - gmx:100793755 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02317 10 40991261 40995921 Rops10g02317 10 40991261 40995921 ECH