Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02298 ATGTCGTCCTCCTCAGAGGGTGAAAGAGAAGCAGGAGAAGCGAGGGGAAGCATGAACGAGCTGATCCCATACCTTCCAGACGAAGTGGCAGTTAACTGCTTAGCACGTGTCCCACGCTCACACCACCCATCCCTCTACCTCGTTTCCAAACCAATCCGATCCCTCATCTCTTCCCCTCTCTTCTTCAACGCTCGCTCCCTCCTCAACTGTACCCAGCACCTTCTCTACCTCACGCTCCGAACACGTGACTCCACCCTCCAACAATGCTTCACTCTCCACCACAACAACTCCAACAACTTCCTCGTCCCCATTCCCCCACTCCCTTCCCCAGCAATTGGCTCCGCCTACGCCGTCATCGGCCCCACCATCTACGTCATCGGCGGCTCCATCAACGACATCCCTTCCTCCCAAGTCTGGCTTCTCGACTGCCGCTTCCACCGCTGGCGTCCCGGTCCCTCCATGCGCGTCGGCCGTGAGTTCGCTGCCGCCGGCGTAGTCGACGGCAAGATTTACGTCATCGGTGGATGCCTCGCCGACACGTGGTCCAGGTCCGCCAACTGGGCTGAGGTTTTCGACCCCGTCGCTGGAAAGTGGCAGAGCGTGCCAAGCCCGCCGGAGATGCGGGAGAAGTGGATGCACGCCAGCGCCGTCGTGGATGACAAGGTTTACGGGATGGCGGATCGCGGCGGAGTCGCGTTCCACCCTCGTAGCGGCGCGTGGGAGAGCGTGGGGAGTGAGTTGGATCTCGGGTGGCGTGGGAGGGCGTGTGTGGTGGATGGGATTCTGTATTGCTATGATTTCTTGGGGAAAATCAAGGGCTTCGATGTGAAACTAGGTGTGTGGAAAGAATTGAAGTGTTTGGATGAGGGTTTGCCACGGTTTCTTTGTGGTGCCACCATGGCGGATGTTGGTGGAAAGTTGTTCGTCCTTTGGGAGTGTCAAGGGAACTGGAAAGGGAAAGAAATGGAGATTTGGTGCGCTGAGATTGAGGGTCCTCCATTGTACACTGTTCTTCTGTTGCCTTATGATCACATTCCCTGCCTTTGTCAGGTCACTATTTCCTATCAACGTATGTCTTGTAGGATCGAGATCGTGAAATTATGTAACTAG 1110 0.5631 MSSSSEGEREAGEARGSMNELIPYLPDEVAVNCLARVPRSHHPSLYLVSKPIRSLISSPLFFNARSLLNCTQHLLYLTLRTRDSTLQQCFTLHHNNSNNFLVPIPPLPSPAIGSAYAVIGPTIYVIGGSINDIPSSQVWLLDCRFHRWRPGPSMRVGREFAAAGVVDGKIYVIGGCLADTWSRSANWAEVFDPVAGKWQSVPSPPEMREKWMHASAVVDDKVYGMADRGGVAFHPRSGAWESVGSELDLGWRGRACVVDGILYCYDFLGKIKGFDVKLGVWKELKCLDEGLPRFLCGATMADVGGKLFVLWECQGNWKGKEMEIWCAEIEGPPLYTVLLLPYDHIPCLCQVTISYQRMSCRIEIVKLCN* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02298 369 SMART kelc_smart 122 168 IPR006652 GO:0005515
Rops10g02298 369 SMART kelc_smart 169 221 IPR006652 GO:0005515
Rops10g02298 369 SUPERFAMILY F-box domain 21 96 IPR036047 GO:0005515
Rops10g02298 369 Pfam Kelch motif 160 205 IPR006652 GO:0005515
Rops10g02298 369 Pfam Kelch motif 114 155 IPR006652 GO:0005515
Rops10g02298 369 SUPERFAMILY Kelch motif 74 330 IPR015915 GO:0005515
Rops10g02298 369 CDD F-box_AtAFR-like 21 65 - -
Rops10g02298 369 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 16 330 - -
Rops10g02298 369 Gene3D - 64 330 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02298 Rops-Chr10 40726582 40728300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02298 25 329 Miscellaneous Gene Families AT4G33900 36.970 7.59e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02298 - - gmx:100798508 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02298 10 40726582 40728300 Rops10g02298 10 40726582 40728300 ECH