Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02291 ATGGGTGAAGATAGCCCGCGCGTTGGTGGGTTTCCAGCTGGTCTGGCTGTGATATTGAATGGTGAGAACAGTAAGAAAAATTTGCCAAAAACTCGGCTTCTTTCTTGTTGTGATGATTTGGGTCAACAGTCTGTGGAAAGAACCCTCGAATATGTGTTTGGCCTCCCCAACAGATCACTCAATTCATTGGCTGGTCCGGTTGACAGCAATTTTATTCGCTCTGTTATTAGGAATGATTTCACTAGATATAATGCGAAATTACTTGAATCTTCTAGTGAAAGAGATGGGATTTGTGGGCCCGATGTTGTCGGCCTAGAAGAATCCAGCATCTGTGGTGATATTAAAATCATCAAGTCACCTTTTCTTTTAGAGAGCATGGCGATGTTCAGTAGTGCCAGGGCTAATACTTGTGTTTGGAAAGGAAAATGGATGTATGAAGTTTTGTTAGAAACTTCTGGCATACAGCAGATTGGTTGGGCCACTCTTTCTTGCCCTTTCACTGACCATAAAGGTGTTGGTGATGCTGATGATTCATATGCTTATGATGGGAGACGTGTTAGCAAGTGGAACAAGGATGCTGAGACATATGGTCAGTCATGGGTTGTTGGTGATGTCATTGGATGTTGCATAGATTTAGATCGAGATGAAATACTATTCTACAGGAATGGCAATTCACTTGGGGTGGCATTCCAAGGAATTCGAAAAATGGGTCCTGGTTTTGGTTATTATCCAGCAATTTCTCTCTCCCAAGGTGAAAGATGTGAATTGAACTTTGGGGCCCGACCCTTCAAGTACCCAATTGAAGGCTACCTTCCTCTTCAGGCTCCATCCTCTAAGAGTTACTTTGTCACCCGATTGCTGCAATGCTGGTCAAGGCTGTTGGACATGCATTCAGTGGAACGAGCTGAGCATTCTTTAGTTCAGAAATTGAGAAGAGTGAAGAGGTTTGTTTCATTGGAAGAAATTTTTCATCCTGCCTCTTATGCTATATGTGAGGAGTTATTCTCTATACTTGAAGCAGATGTTGGCAGCACAGAGTATATGGTTTGGGGTCCATTGTTGTCCTTCATGTTTGAAGTTTTTGGATTGCATGTGCCCCATGACTATTCAAGCTTGGATAAAGTAGTTGAAGTACTGCTACAATTTCAAGGATCACATGTGCTATTTGAACATATCATAAATGCTCTTTCCTGTGGTTGTAAAATAGCCTCATTAGTTCTAACTGAATGTCCTTACTCTGGATCATATTCTTACCTTGCATTGGCATGTCATCTACTAAGACGAGAGGAACTTATGGTGCTTTGGTGGAAGTCATCAGATTTTGAATTATTGTTTGAAGGTTTTCTGTCACAGAAGACTCCAAACAAGCAGGATCTTGACTCCTTGATACCAACTGTTTGGTGGCCAGGTTCATGTGAAGATGCATCTTATGAAGGTAACATGATATTGACAACCACAGCTTTGTCAGAATCAATCAGCAAGATTGAGGAGAAGCATAGGGACCTCTGTCGCTTAGTTATACAATTTATACCTCCTACAACACCTCCCCAATTACCTGGAGCAGTATTTAGGACATTTTTACAAAGCCTTCTACTGAAGAACAGAGGAGCAGAACGAAATGTCCCACCACCTGGAGTTTCTAGCAACTCGGTTCTTGTTTCAATTTATACAGTTGTACTACATTTTCTATCTGAAGGATTTGCCTTGGGTGATATCTGTGGCTGGTTAAAGAGCTGCAAAGCAGATGTTGGTTTCCTTCATAGAGGCGGTCAACAAAGTTTTCCCGTACACTTGTTTCTAAAAAATGATCCTCATAGAACTGATATTTCCAGGCTTGGGGGATCTTATACCCATTTATCAAAACTTCATCCTGCAATTGATCATGAAATGGAAGTGGTTCAATGGGATGAAGGTTGCATGGATAATGAAGAAACCAGAGTGACTCATTCAACCAGGCAGAAACCATGCTGTTGTTCTAGTTATGATTCTGATTTCACCAGAAACTTGAAGGTTCCAGCTAAATACCTGGCAAAAGGTTCTCGGGGCCATTGTAGCTCTATTCCAGAAAGATCTGCTCATGTTGATGCTGAATGCAGTGATGGGAGTTTGAACGATGATATAACAGACAAACCTAGCTCCAGTGATCAATCTGAACCCGAGTATGGTTACCGCCAAGTGCACCATATGAAATCTGTACCAAAAGATACTAATTTGTCTACAGCTACTCTATGTGAAGAAGAGCTACTTGATGCTCTGCTGTGGTTGTACCATGTTGGTCTTGCTCCGAATTTTAAACAGGCATCATACTACATGACTCATCAGGCACAGTCAATCTCCCTTCTGGAGGAAACTGATAAGCAAATAAGAGAACGAACGTGTAGCGAGAAATTGAAGCATTTAAAAGAAGCTCGTAATGAATATAGAGAAGAGGTTATTGATTGTGTTAGGCATTGTGCTTGGTATCGCATCTCTCTATTGTCTCGATGGAAGCAGCGAGGAATGTATGCAATGTGCATGTGGGTTGTCCAGTTGCTACTGGTTCTTAGCAATATGGATTCAGTGTTTATCTACATACCTGAATATTATCTGGAAGCTTTGGTTGATTGCTTTCATGTTTTGCGGAAAAGTGATCCTCCATTTGTTCCGTCCAATATTTTGATCAAGCGAGGACTTGCTTCATTTGTCACCTTTGTAGTTACTCATTTCAACGATCCTAGAATATCAAGTGCAGATCTTAGGGATCTTCTTCTCCAGTCTATATCTGTCCTGGTGCAGTATAGGGAGTATTTGGCTGCTTTTGAGAGCAATGAGGCAGCCACCCAAAGGATGCCTAAAGCTTTATTATCAGCATTTGATAACAGATCTTGGATCCCGGTGACAAACATACTTCTGCGATTATGCAAGGGTTCTGGCTTTAGTTTTTCAAAGAATGGAGAATCATCTTCGTCATCAGTTCTTTTCCAAAGGTTGCTAAAAGAAGCTTGTATAATTGAGGAAGGATTGTTTTCATCTTTTCTAAACCGTTTATTTAATACACTTAGCTGGACCATGACTGAATTTTCAGTTTCTGTTCGAGAAATGCAAGAAAAATACCAGGTAATAGAGTTTCAGCAAAGGAAGTGCTGTGTCATATTTGATCTTTCATGTAATCTTGCAAGGATTCTAGAGTTCTGCACTCGTGAGATTCCTCAAGCATTCCTGTCTGGACCAGACACAAACCTACGGAGGTTAACGGAGTTGGTTGTATTTATCTTAAATCACATTACTTCTGCAGCCGATGCTGAATTCTTTGACTTATCCCTTAGACGGCATAGCCAATCTTCAGAGAAAGTAAATCGTGGCATGATATTGGCACCTCTCATAGGGATCATCTCAAATTTATTGGATGCTACTAATTCGGCAGAATATCGAGAGAACAATGATCTTTTGGATGTTTTTGCAAGCATGGACTGTCCTGATACTGTTAATTATGGATTCCAGTATCTTCTGGATTATAACTGGGATGGATCTTGTCGTGGGGAAGCTTATGTGGCAAAATATGAGCAGCTAGAGAATTTTCTGAGCCTCTGCCGCACTATGTCACAACGTGATAAAGTGGACAATGTTAAAGATACAGATCTTGACGATAGCTTGTGCTGCATATGTTACGCATGTGAAGCAGATGCCCAGATTTCACCTTGTTCGCATAGGTCTTGCTATGGCTGTATAACCAGGCATCTTTTGAACTGTCAGAGATGTTTCTTTTGCAACGCTACAGTGACAGATGTTAGCAGAATTGATGAGAAGACAGGCTAA 3795 0.4103 MGEDSPRVGGFPAGLAVILNGENSKKNLPKTRLLSCCDDLGQQSVERTLEYVFGLPNRSLNSLAGPVDSNFIRSVIRNDFTRYNAKLLESSSERDGICGPDVVGLEESSICGDIKIIKSPFLLESMAMFSSARANTCVWKGKWMYEVLLETSGIQQIGWATLSCPFTDHKGVGDADDSYAYDGRRVSKWNKDAETYGQSWVVGDVIGCCIDLDRDEILFYRNGNSLGVAFQGIRKMGPGFGYYPAISLSQGERCELNFGARPFKYPIEGYLPLQAPSSKSYFVTRLLQCWSRLLDMHSVERAEHSLVQKLRRVKRFVSLEEIFHPASYAICEELFSILEADVGSTEYMVWGPLLSFMFEVFGLHVPHDYSSLDKVVEVLLQFQGSHVLFEHIINALSCGCKIASLVLTECPYSGSYSYLALACHLLRREELMVLWWKSSDFELLFEGFLSQKTPNKQDLDSLIPTVWWPGSCEDASYEGNMILTTTALSESISKIEEKHRDLCRLVIQFIPPTTPPQLPGAVFRTFLQSLLLKNRGAERNVPPPGVSSNSVLVSIYTVVLHFLSEGFALGDICGWLKSCKADVGFLHRGGQQSFPVHLFLKNDPHRTDISRLGGSYTHLSKLHPAIDHEMEVVQWDEGCMDNEETRVTHSTRQKPCCCSSYDSDFTRNLKVPAKYLAKGSRGHCSSIPERSAHVDAECSDGSLNDDITDKPSSSDQSEPEYGYRQVHHMKSVPKDTNLSTATLCEEELLDALLWLYHVGLAPNFKQASYYMTHQAQSISLLEETDKQIRERTCSEKLKHLKEARNEYREEVIDCVRHCAWYRISLLSRWKQRGMYAMCMWVVQLLLVLSNMDSVFIYIPEYYLEALVDCFHVLRKSDPPFVPSNILIKRGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYREYLAAFESNEAATQRMPKALLSAFDNRSWIPVTNILLRLCKGSGFSFSKNGESSSSSVLFQRLLKEACIIEEGLFSSFLNRLFNTLSWTMTEFSVSVREMQEKYQVIEFQQRKCCVIFDLSCNLARILEFCTREIPQAFLSGPDTNLRRLTELVVFILNHITSAADAEFFDLSLRRHSQSSEKVNRGMILAPLIGIISNLLDATNSAEYRENNDLLDVFASMDCPDTVNYGFQYLLDYNWDGSCRGEAYVAKYEQLENFLSLCRTMSQRDKVDNVKDTDLDDSLCCICYACEADAQISPCSHRSCYGCITRHLLNCQRCFFCNATVTDVSRIDEKTG* 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02291 1264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1205 1261 IPR013083 -
Rops10g02291 1264 CDD SPRY_RNF123 131 259 IPR035773 -
Rops10g02291 1264 PANTHER RING FINGER AND SRY DOMAIN-CONTAINING 23 1262 IPR045129 GO:0004842
Rops10g02291 1264 FunFam E3 ubiquitin-protein ligase RKP 112 286 - -
Rops10g02291 1264 CDD RING-HC_RNF123 1210 1253 - -
Rops10g02291 1264 SUPERFAMILY RING/U-box 1194 1255 - -
Rops10g02291 1264 SUPERFAMILY Concanavalin A-like lectins/glucanases 109 266 IPR013320 -
Rops10g02291 1264 Gene3D - 113 288 IPR043136 -
Rops10g02291 1264 ProSiteProfiles Zinc finger RING-type profile. 1212 1246 IPR001841 -
Rops10g02291 1264 FunFam E3 ubiquitin-protein ligase RNF123 1203 1260 - -
Rops10g02291 1264 Pfam SPRY domain 142 260 IPR003877 GO:0005515
Rops10g02291 1264 MobiDBLite consensus disorder prediction 705 720 - -
Rops10g02291 1264 ProSiteProfiles B30.2/SPRY domain profile. 65 263 IPR001870 -
Rops10g02291 1264 MobiDBLite consensus disorder prediction 695 728 - -
Rops10g02291 1264 Pfam Ubiquitin elongating factor core 731 951 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Rops10g02291 1264 SMART SPRY_3 140 262 IPR003877 GO:0005515
Rops10g02291 1264 Coils Coil 790 810 - -
Rops10g02291 1264 Pfam E3 ubiquitin-protein ligase RKP N-terminus 1 131 IPR045737 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02291 K12169 - gmx:100800617 2379.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02291 10 40672887 40683544 Rops10g02291 10 40672887 40683544 ECH