Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02272 ATGTTGGTCTTCTCCAAGTTGAGGAAAGCATTCGAGATCCCCTTCGGATTCTGCCGAAACCACAACCTCAGAAGGTTTTCGATTGCGTCCGAGAAAGGTGTGTCTCCAGAACCATACCCAGAACTAAACCCGCAACTGGGTCTTCGCTTCTGCATGTGGGTGGCACTCAAGTTCGAGAATCTTCGCAACGAATCCTATAACTTGGTCAGTGAGGTCCTTTACTCTAACAACTGGTTTTCTCTTTATTGGGAAGCTCTTGAGCTGCTTAAGAAATCTGGGGTTTTGATAACTTCTGATTCGGTTAGAGCTTTGATTTGGGCGTATTCCAAGATGGGTCTCACTGAGAAGGCTATAGAATCATTTGGTAGAATGCATGAATTGGGTTGTAAGCCAGATGCTCTTGCATATAACACTATTTTGACAACTGTGTTGAAGAAAAAGTTGTTTTTGCTGGCTTTTGCAGTGTACGATATGATGCTCAAGTCCAATTGTTGTCCTGATGGATATACTTTTAACCTCTTAATTGATGGGTTTTGTAAAAGTGAGAACATGAAAGGTGCACTTGAGATACTTGATGAGATGGACCAAAGGGATATATTGCCAACTGTTATAACGTTTACTGCTATTCTTTCTGGTCTGTGTCAGGGGAAGAAGGTGGATGAGGCGTATAGGTTGTTTAATGTGATGAAAGAAAGAGGGTGCCGGCCTGATTTGATTTCTTATAATGTTTTGATTAATGGGTTTAGCAAATTGGGGAGGTTAGATGAAGCTGTTTCGGTTATGCGGTTGTTAGAGAGAGATGGGTTTTCACTTCAGCTAAACGGTTATAGTTCTCTGATTGAAGGCCTTTTTAGGGCTAGGAGATATCATGAGGCACATTTGTGGTACACGAGGATGTTTAAGGAGGGCATTAAGCCGGATGTTGTCTTGTACACCATTATGATACGTGGTTTGTCAGAAGAGGGCAGGGTTGGTGAAGCTGTCAGGATGTTAGATGAGATGACTCAGAGAGGCTTAATTCCTGATGCATATTGTTATAATGCAGTAATTAAAGGCCTCTGTGACGTTGGACTTTTGGATCGAGTACGATCTCTTCAACTTGAGATTTCTGAGTATGATCAGTTTCGTAATACTTGCACGTATACCATTCTCATCTGTGACATGTGTAAGAAAGGAATGGTTGGGGAGGCACAAGAATTATTTAATCAGATGGAGAAGCATGGATGTTTTCCTTCAGTTGTGACCTTCAATGCTCTTATAAATGGACTTTGCAAGGCTGGTAAACTTGAGGAGGCACACCTTTTATTTTACAAGATGGAGATCGGGAGAAGTCCTTCGCTGTTCTTCCGGCTTTCTCAGGGTTCAGATCGGGTTTTTGACAGCGTTAGTCTCCAGAAAAAGGTGCAGCAAATGTGTGAGTCTGGAGAAATTTTGAATGCTTACAAATTTCTCATACAACTTGCTGATAGTGGGGTTGTGCCTGACATTATGACATACAACATTCTAATCAATGGCTTTTGCAAGGCTGGTAATATTAATGGTGCCTTCAAGCTTTTCAAAGATCTGCAACTCAAGGGGCTCTCGCCTGATTCTGTTACATATGGGACACTTATTGATGGGCTTTACAGGGTTGGCAGAGAAGAGGATGCCTATAAGATTCGTGAGCATATGTTGAAGCATGGGTGTGAGCCTAGCTTTGCAGTTTATAAAGCACTTATGACTTGGTTGTGTAGAAAGAGGAAGGTCTCACTGGCCTTCAGTCTTTATTTGGAATATCTGAAGAACCTTCCTGGTCGGGAAGATGATTCACTCGATGCTTTGGAGGAACATTTTGTTAGAGGAAAAGTGGAACAAGCAATTCGAGGTCTACTTGAACTGGATTTCAAGTTTAGAGATTTTAATTTAGCTCCATATACGATTCTACTTATTGGATTCTGTCAGGTAAAAAAAGTAGATGAAGCATTAAGTATATTTTCTGTTCTTGATGAGTTCAATATCAATATCAATCCTCCAAGTTGTGTGCATTTGATCAATGGTCTCTGTGCGGAAGGGAAGCTGGATGATGCAGTAGGCATCTTCCTTTACACTCTTGACAAAGGTTTCATGTTGGGGCCTACAATATGTAAACAGCTCCTCAAGTGTCTTCTTCTTTCCCAAGATAAAAAGGGGCATGCTATTGACCTTATTGCTAGGATGAAGTCTCTTGGATACTGTTTAAATACACGTCAATATCACGCCACGATGTCCCTTTTACATCGATTACAGGGAAGGACAAGCAATAAAAAAATGTTCTCAGAAGAGATTAAATAA 2310 0.4108 MLVFSKLRKAFEIPFGFCRNHNLRRFSIASEKGVSPEPYPELNPQLGLRFCMWVALKFENLRNESYNLVSEVLYSNNWFSLYWEALELLKKSGVLITSDSVRALIWAYSKMGLTEKAIESFGRMHELGCKPDALAYNTILTTVLKKKLFLLAFAVYDMMLKSNCCPDGYTFNLLIDGFCKSENMKGALEILDEMDQRDILPTVITFTAILSGLCQGKKVDEAYRLFNVMKERGCRPDLISYNVLINGFSKLGRLDEAVSVMRLLERDGFSLQLNGYSSLIEGLFRARRYHEAHLWYTRMFKEGIKPDVVLYTIMIRGLSEEGRVGEAVRMLDEMTQRGLIPDAYCYNAVIKGLCDVGLLDRVRSLQLEISEYDQFRNTCTYTILICDMCKKGMVGEAQELFNQMEKHGCFPSVVTFNALINGLCKAGKLEEAHLLFYKMEIGRSPSLFFRLSQGSDRVFDSVSLQKKVQQMCESGEILNAYKFLIQLADSGVVPDIMTYNILINGFCKAGNINGAFKLFKDLQLKGLSPDSVTYGTLIDGLYRVGREEDAYKIREHMLKHGCEPSFAVYKALMTWLCRKRKVSLAFSLYLEYLKNLPGREDDSLDALEEHFVRGKVEQAIRGLLELDFKFRDFNLAPYTILLIGFCQVKKVDEALSIFSVLDEFNININPPSCVHLINGLCAEGKLDDAVGIFLYTLDKGFMLGPTICKQLLKCLLLSQDKKGHAIDLIARMKSLGYCLNTRQYHATMSLLHRLQGRTSNKKMFSEEIK* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02272 769 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 44 359 - -
Rops10g02272 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Rops10g02272 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 530 564 IPR002885 -
Rops10g02272 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Rops10g02272 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 669 703 IPR002885 -
Rops10g02272 769 NCBIfam pentatricopeptide repeat 309 343 IPR002885 -
Rops10g02272 769 NCBIfam pentatricopeptide repeat 379 412 IPR002885 -
Rops10g02272 769 NCBIfam pentatricopeptide repeat 498 531 IPR002885 -
Rops10g02272 769 NCBIfam pentatricopeptide repeat 532 565 IPR002885 -
Rops10g02272 769 NCBIfam pentatricopeptide repeat 276 308 IPR002885 -
Rops10g02272 769 NCBIfam pentatricopeptide repeat 135 167 IPR002885 -
Rops10g02272 769 NCBIfam pentatricopeptide repeat 414 440 IPR002885 -
Rops10g02272 769 NCBIfam pentatricopeptide repeat 107 133 IPR002885 -
Rops10g02272 769 NCBIfam pentatricopeptide repeat 204 237 IPR002885 -
Rops10g02272 769 NCBIfam pentatricopeptide repeat 239 270 IPR002885 -
Rops10g02272 769 NCBIfam pentatricopeptide repeat 169 202 IPR002885 -
Rops10g02272 769 Gene3D Tetratricopeptide repeat domain 198 265 IPR011990 GO:0005515
Rops10g02272 769 Gene3D Tetratricopeptide repeat domain 448 523 IPR011990 GO:0005515
Rops10g02272 769 Gene3D Tetratricopeptide repeat domain 371 441 IPR011990 GO:0005515
Rops10g02272 769 Gene3D Tetratricopeptide repeat domain 51 197 IPR011990 GO:0005515
Rops10g02272 769 Gene3D Tetratricopeptide repeat domain 524 595 IPR011990 GO:0005515
Rops10g02272 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 166 IPR002885 -
Rops10g02272 769 Gene3D Tetratricopeptide repeat domain 603 768 IPR011990 GO:0005515
Rops10g02272 769 Gene3D Tetratricopeptide repeat domain 266 370 IPR011990 GO:0005515
Rops10g02272 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 634 668 IPR002885 -
Rops10g02272 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Rops10g02272 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Rops10g02272 769 Pfam PPR repeat 638 663 IPR002885 -
Rops10g02272 769 Pfam PPR repeat 675 695 IPR002885 -
Rops10g02272 769 Pfam PPR repeat 103 129 IPR002885 -
Rops10g02272 769 Pfam PPR repeat 276 304 IPR002885 -
Rops10g02272 769 Pfam PPR repeat family 376 425 IPR002885 -
Rops10g02272 769 Pfam PPR repeat family 133 180 IPR002885 -
Rops10g02272 769 Pfam PPR repeat family 201 250 IPR002885 -
Rops10g02272 769 Pfam PPR repeat family 306 355 IPR002885 -
Rops10g02272 769 Pfam PPR repeat family 494 542 IPR002885 -
Rops10g02272 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Rops10g02272 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Rops10g02272 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Rops10g02272 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Rops10g02272 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02272 218 716 Glycosyltransferase AT1G05670 26.400 7.15e-50 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02272 - - lang:109340115 1093.18