Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02127 ATGGAAAGGTCTAGATCTAAGAGGAACTACTACTATGACCAAGACTATGATTCTGAGACCTTGGCGAGGACAAGACCACGCTATAACCACCACTACAATACAAGTGCTCACCGTCATCGTGGCGGAGGAGGTGGTCGGCATCTTAAGACGCAGGACTCGCCGTTAACGGTAACTACGAGTTACCGCATTTTGTGTCACGACCTGAAGGCCGGTGGTGTGATTGGAAAGTCCGGCAGCATTATAAAGTCCATAAGGCAGCACACCGGCGCGTGGATCAACGTTCACGAGCTGATCCCCGGCGACGAGGAGCGAATCATAGAGATTTCCGACACGCGCCGGCGGGACCCGGAGGGAAGGATGCCGTCATTCTCGCCGGCGCAGGAGGCGCTGTTGCTGATCCATGAGAGGATTTTGGAGAGCGATGCGGCGTTTGGAGTTGGGGAGGAGGAGGAGGAGTATGCCGGCGGTGGTGGTGGAGGAGGCGGTGGTGGCGGAGGCAGGGGCAACCGTGTGGCGACGAGGTTGGTGGTTTCGAGAATGCACGTAGGGTGTTTGTTGGGGAAAGGAGGGAAGATTATTGAACAAATGAGGATGGATACAAAGACACAAATTAGGATTCTACCTAGAGATCACAATCTTCCTCGTTGTGTTTCAATGTCTGAAGAGATTGTTCAGGTTGTAGGTGATGTAAATGCTGTAAAGAATGCTCTAGTAATTATATCATCCCGGTTGAGGGAGAGCCAGCATCGTGACCGTGGTCATTTCCATGGACGTGGACACTCACCAGAGCGTTTCTTCTCTCCTGATGATGATTATATTCCTCACGTGACTAGTGGATCTCGTAGATCATCTGTAGAAGGGGCTGCCTTTGGATCACGAGTATCTACCGCCAATGCCAGAAACAATAATCACCCTTCATTAGGTTATACATCGGAACCAGGCGCTGCTCCTGTGGCTGATGATGCACAGCCCTTCTATGGGGAGGACCTTGTTTTCCGTATACTCTGTCCAGTTGAGAAGGTTGATCGTATTATTGGGGAATCAGATGGAATTGTAGAGTTCCTTCAAAATGAAGTTGGCGTAGATGTTAAGGTCACTGATCCTGTTGGCGGTTCAGATGAACAGATAATTATCATTACTTCAGAGGAGGGTCCTGATGACGAGCTGTTCCCAGCTCAGGAAGCTTTGCTACACATACAAACTCGCATTGTCGATCTTGTTCTAGATAAGGACAATACTATAACCACCAGGCTTGTTGTCCCATCCAGTGATATTGAATGCTTAGATGGAAAAGATACATCACTATTGGAAATAAGGAGGTTGACTGGTGCTCAAATTCAAATATTGCCTAGAGAAGAACTACCTCTCTGTGTTGCAAAAACTGATGAACTGGTACAGATTGTGGGAGAGATAAAAGCAGCCCGAGATGCAGTTGTTGAGGTGACATCAAGATTAAGAAGTTACTTGTATAGGGATTTCTTTCAAAGGGACACAGTACCACCATCAGCCCCCTTACCTGGTGTGGAGGCATCTTCATCCAATAATATAGCTCCAGTAACTGAAACTCCCACAACCTATCAGAATGTGCAAACTATGGCATCAGCCCTTCCATCAAAGGAAACTGGAGGATCTAGCACTGAGACAGGAAAGCAGAAAGAAAGTGATCGCAGCGATGATGTGCCTAGTGGTTTAAATAGGATCGCTGTACCTCTTGTCACGAGGAGTACACTTGAAGTTGTTCTACCAGAGTATGCAGTTCCAAAGCTTATAGCAAAATCCAAAAGCAAGCTTGCTCAGATAAGTGAGCTATCGGGAGCCAATGTAACGCTTGTAGAAGATAGACCAGATGCTACACAGAAGATTATTCAGATATCTGGTACTCCAGAGCAGGCAGAGAGAGCTCAGAGCTTGCTCCAGGGATTTATTTTGAGCACACAAGAGGATGGCCCTTAA 1953 0.4762 MERSRSKRNYYYDQDYDSETLARTRPRYNHHYNTSAHRHRGGGGGRHLKTQDSPLTVTTSYRILCHDLKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALLLIHERILESDAAFGVGEEEEEYAGGGGGGGGGGGGRGNRVATRLVVSRMHVGCLLGKGGKIIEQMRMDTKTQIRILPRDHNLPRCVSMSEEIVQVVGDVNAVKNALVIISSRLRESQHRDRGHFHGRGHSPERFFSPDDDYIPHVTSGSRRSSVEGAAFGSRVSTANARNNNHPSLGYTSEPGAAPVADDAQPFYGEDLVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVKVTDPVGGSDEQIIIITSEEGPDDELFPAQEALLHIQTRIVDLVLDKDNTITTRLVVPSSDIECLDGKDTSLLEIRRLTGAQIQILPREELPLCVAKTDELVQIVGEIKAARDAVVEVTSRLRSYLYRDFFQRDTVPPSAPLPGVEASSSNNIAPVTETPTTYQNVQTMASALPSKETGGSSTETGKQKESDRSDDVPSGLNRIAVPLVTRSTLEVVLPEYAVPKLIAKSKSKLAQISELSGANVTLVEDRPDATQKIIQISGTPEQAERAQSLLQGFILSTQEDGP* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02127 650 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 54 277 - -
Rops10g02127 650 CDD KH-I_PEPPER_rpt2_like 173 245 - -
Rops10g02127 650 Gene3D K Homology domain, type 1 55 168 IPR036612 GO:0003723
Rops10g02127 650 Gene3D - 328 489 - -
Rops10g02127 650 SMART kh_6 573 643 IPR004087 GO:0003676
Rops10g02127 650 SMART kh_6 57 138 IPR004087 GO:0003676
Rops10g02127 650 SMART kh_6 412 486 IPR004087 GO:0003676
Rops10g02127 650 SMART kh_6 328 401 IPR004087 GO:0003676
Rops10g02127 650 SMART kh_6 169 245 IPR004087 GO:0003676
Rops10g02127 650 Pfam KH domain 576 639 IPR004088 GO:0003723
Rops10g02127 650 Pfam KH domain 61 109 IPR004088 GO:0003723
Rops10g02127 650 Pfam KH domain 173 241 IPR004088 GO:0003723
Rops10g02127 650 CDD KH-I_PEPPER_rpt2_like 415 486 - -
Rops10g02127 650 CDD KH-I_PEPPER_rpt1_like 329 397 - -
Rops10g02127 650 MobiDBLite consensus disorder prediction 533 563 - -
Rops10g02127 650 CDD KH-I_PEPPER_rpt1_like 58 131 - -
Rops10g02127 650 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 406 493 IPR036612 GO:0003723
Rops10g02127 650 ProSiteProfiles Type-1 KH domain profile. 170 240 - -
Rops10g02127 650 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 166 250 IPR036612 GO:0003723
Rops10g02127 650 ProSiteProfiles Type-1 KH domain profile. 58 130 - -
Rops10g02127 650 MobiDBLite consensus disorder prediction 533 548 - -
Rops10g02127 650 Gene3D K Homology domain, type 1 573 645 IPR036612 GO:0003723
Rops10g02127 650 Gene3D K Homology domain, type 1 169 249 IPR036612 GO:0003723
Rops10g02127 650 ProSiteProfiles Type-1 KH domain profile. 574 638 - -
Rops10g02127 650 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 56 109 IPR036612 GO:0003723
Rops10g02127 650 MobiDBLite consensus disorder prediction 250 270 - -
Rops10g02127 650 ProSiteProfiles Type-1 KH domain profile. 329 396 - -
Rops10g02127 650 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 323 387 IPR036612 GO:0003723
Rops10g02127 650 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 567 644 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02127 Rops-Chr10 38529500 38534156 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02127 K21444 - gmx:100804167 1104.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02127 10 38529500 38534156 Rops10g02127 10 38529500 38534156 ECH