Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02118 ATGTGCACAGTGCACTGTGTCACTCTGTTTCTTTTTGTTCACAAGTTTCTTACATTTCCTTTTTTGTTCACGATCCCTTTCTTTCCTCCTTCATTGAACTTGGCTTCCTCTCTCTTCTTGGAAAAACTCATGGAGTCTCTAGAACTCGCTCGTTTTCTTCTGTATCCGCGCACATCAACGTTGCCAACTCAAGCCAGTCACAATTCACGATTCATAACTCAACTGGGTTTCCCTTCTTTGTTCAAAAAAGCAATTAAAAAGGCCAACTTGCGATCATTTTCCGGTGAAACTGATGGTGGGGCTGCTGCTTCACAAGACGAGTCTTTTGCTTTCGAAGACGAAACCCATCACCGTGATAATGAAGAAAGGGCTCTCGTATTAGCTAGGGAGATGGATGCTTTTGGCTATCTAATTGGTTTTCGCTTGATTCCCGAGTCTGGGAACGTCACTAAAGAAGAAGATTCAACAAGTGATGAAGTTGAAAAACCTGAGGCTGAGGATATAGAAGAAGAGAAAGCTGAGACTAGAGTATCCTACAATATTGTTTTTGTTACTGCTGAAGCTGCACCATATTCAAAGACCGGTGGCCTTGCAGATGTTTGTGGCTCTTTGCCAATAGCACTTGCAGCTCGTGGACACCGTGTAATGGTTGTCTCTCCTAGATACATACATGGTACTTCTGAGGATCTTAAGTTTTCTGGTACAGTTGATCTAGATTGCTGCGTCAAATTATATTGCTTTGGAGGTGTTCAAGAAGTTGGTTTTTTCCATGAGTATAGGAAAGGTGTTGATTGGGTATTTGTAGATCACCCCTCATACCATAGACCGGGGAATCCATATGGGGATAAGTATGGGACTTTTGGGGATAATCAGTTTCGGTTCACTTTACTTTGCCATGCAGCATGTGAAGCCCCATTGGTGCTTCCATTGGGAGGGTTCACTTATGGAGAAAAATGTTTATTCCTTGTCAATGATTGGCATGCCAGCTTAGTCCCAGTACTTTTGGCAGCGAAATATCGTCCACATGGGGTACATAAGGATGCACGTAGTGTATTAGTGATTCATAATATTGCACATCAGGGAGTGGAACCTGCAATTACATATAGTAATTTGGGGCTACCTCCAGAATGGCTTGGAGCACTGGAATGGGTGTTCCCTACATGGGCAAGGACGCATGCTCTTGACACAGGTGAAGCTGTCAATTTTCTGAAAGGTGCCATTGTTACAGCTGACCGGATACTGACAGTAAGCAAGGGCTATTCCTGGGAGATAACAACTAGAGAAGGTGGACATGGGTTACATGAGCTATTAAGCAGTCGGAAAAGTATTCTCAGTGGGATCACAAATGGAATTGATGTTAATGAATGGGACCCATCATCTGATGAACATATTGCTTGCAACTATTCTGCTGATGACCTTTCTGGGAAGGTCAAATGCAAGATTTCTTTGCAGGAGGAATTGGATCTTCCAGTGAGGCCTGAATGTCCGTTGATTGGATTCATTGGAAGACTTGACTACCAGAAAGGTATTGACCTGATTCGCTTGGCGATTCCAGAGCTCATGAAAGATGATGTTCAGTTTGTAATGCTAGGTTCCGGAAACCCTGTTTATGAAGACTGGATGAGAGCAACGGAGGCAGCTTATAAAGATAAATTTCGGGGTTGGGTTGGATTTAATGTTCCAATATCTCATAGAATAACTTCAGGCGCTGATATACTGTTAATGCCATCCACGTTTGAGCCCTGTGGACTAAATCAGTTGTACGCAATGAGATATGGAACTATACCGGTGGTTCATGAAACTGGGGGACTAAGAGATACTGTTCAAAATTTTAATCCATATGCTGAAGGAACTGATGCTGAAGGCACAGGGTGGACATTTTCTCCACTAACAAAGGAGAGCATGTTAGCGGCTCTAAGATATGCCGTTCAAACATATAATGAACATAAGTCTTCTTGGGAGGGATTGATGAAACGAGGTATGGCTAGAAACTACACATGGGTTAATGCTGCCACTCAATATGAGCAAGTCATTGAGTGGGCATTCATGGATCCACCTTATTGCTGA 2067 0.4296 MCTVHCVTLFLFVHKFLTFPFLFTIPFFPPSLNLASSLFLEKLMESLELARFLLYPRTSTLPTQASHNSRFITQLGFPSLFKKAIKKANLRSFSGETDGGAAASQDESFAFEDETHHRDNEERALVLAREMDAFGYLIGFRLIPESGNVTKEEDSTSDEVEKPEAEDIEEEKAETRVSYNIVFVTAEAAPYSKTGGLADVCGSLPIALAARGHRVMVVSPRYIHGTSEDLKFSGTVDLDCCVKLYCFGGVQEVGFFHEYRKGVDWVFVDHPSYHRPGNPYGDKYGTFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKCLFLVNDWHASLVPVLLAAKYRPHGVHKDARSVLVIHNIAHQGVEPAITYSNLGLPPEWLGALEWVFPTWARTHALDTGEAVNFLKGAIVTADRILTVSKGYSWEITTREGGHGLHELLSSRKSILSGITNGIDVNEWDPSSDEHIACNYSADDLSGKVKCKISLQEELDLPVRPECPLIGFIGRLDYQKGIDLIRLAIPELMKDDVQFVMLGSGNPVYEDWMRATEAAYKDKFRGWVGFNVPISHRITSGADILLMPSTFEPCGLNQLYAMRYGTIPVVHETGGLRDTVQNFNPYAEGTDAEGTGWTFSPLTKESMLAALRYAVQTYNEHKSSWEGLMKRGMARNYTWVNAATQYEQVIEWAFMDPPYC* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02118 688 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 150 687 - -
Rops10g02118 688 MobiDBLite consensus disorder prediction 149 171 - -
Rops10g02118 688 NCBIfam glycogen/starch synthase, ADP-glucose type 180 678 IPR011835 GO:0004373
Rops10g02118 688 Pfam Glycosyl transferases group 1 496 646 IPR001296 GO:0016757
Rops10g02118 688 Hamap Glycogen synthase [glgA]. 179 681 IPR011835 GO:0004373
Rops10g02118 688 Gene3D Glycogen Phosphorylase B; 453 664 - -
Rops10g02118 688 CDD GT5_Glycogen_synthase_DULL1-like 180 680 - -
Rops10g02118 688 Gene3D Glycogen Phosphorylase B; 199 677 - -
Rops10g02118 688 FunFam Starch synthase, chloroplastic/amyloplastic 180 465 - -
Rops10g02118 688 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 172 682 - -
Rops10g02118 688 Pfam Starch synthase catalytic domain 180 438 IPR013534 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02118 Rops-Chr10 38407899 38415547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02118 149 678 Glycosyltransferase AT3G01180 49.162 6.71e-167 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02118 K00703 - gmx:100807354 1083.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02118 10 38407899 38415547 Rops10g02118 10 38407899 38415547 ECH