Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02111 ATGGCTGCTACTGCTGCGTTTCGATCGAAACCTCGCAGTTACAAGGAAACAGCGACCCTCGCACTTTCCCAGTTGAGGTACTTTGCGTTCAACTACACGCCCGCTGCCAATTCTCAATACCCGTCACGCTCCACGCTCATCAACACCCCAAAACCCCTCTTTCTCCGCGGCGATTTCACACAAAGGAGGAGTACCCTTTTCGATAATAGGAGAGGGTACAACGTTGTTGCTTCCTCTGGGGAACCCCCTGAAGTTTGGTCTGGCGGCGGGATTGTTGTTCGGTCGGGGAATTCCAATTTTGACGTCCCCGGCGGCGGCGGCGGCGGAGGTGGCGGTGGGGGTGCTGCGAATTCTGGTGATTCGGGGTCGTCGAATTCGAAAGATGGGTGCTGGGGTGGGTCCAATTTTGGGGCTAATTTCCCAACACCGAAGGAGATTTGCAATGGGCTTGACAAATTCGTAATTGGACAAGAGAGGGCCAAGAAGGTGCTTTCTGTGGCTGTTTATAATCACTATAAGAGAATATTTCATGAGTCTTCATCCAACTGGCCTGCAGGAGATTCAAGTGATAATGGCAAAGCTGAGGCTGTTGATGATGACAAAGTTGAACTTGAGAAAAGCAATATCCTTCTAATGGGGCCAACAGGATCAGGGAAGACATTACTTGCAAAAACCTTGGCTCGGTTTGTAAATGTTCCCTTTGTTATTGCAGATGCAACTACACTCACTCAGGCAAGTTATGTTGGAGAGGATGTGGAGTCCATATTATACAAGCTCCTCGTGGCTGCAGATTATAACGTGGCAGCTGCACAGCATGGCATTGTTTACATTGATGAAGTTGACAAGATTACCAAAAAGGCTGAGAGCCTTAATATCAGTAGAGATGTCTCTGGTGAAGGTGTTCAGCAGGCATTACTGAAGATGCTTGAGGGAACGGTTGTCAACGTTCCTGAGAAAGGAGCCCGAAAACATCCCAGAGGTGACAATATTCAGATTGACACAAAGAATATACTTTTCATTTGTGGAGGAGCTTTTATTGACTTAGAGAAAACAATCTCAGACAGGCGTCAAGATTCTTCTATTGGATTTGGGGCACCTGTACGTGCAAACATGAGGACTGGCAGTGTCACAGATGCTGCTATTGCATCATCATTATTAGGAACTGTTGAAAGTAGTGATCTTATTGCATATGGTTTAATACCTGAATTTGTTGGGCGGTTTCCTGTCCTTGTCAGTTTGTCAGCTTTAACTGAAAATCAACTCATTCAGGTCCTCACAGAACCAAAGAATGCTCTTGGGAAGCAATACAAGAAGATGTTCCAAATGAATGGAGTAAAGCTACATTTTACGGAAAATGCTCTAAGATCAATTGCCAAAAAAGCAATATCTAAAAACACCGGTGCTCGGGGCTTACGGTCAATATTAGAGAGTGTTTTGGTAGATGCCATGTATGAGATTCCTGATACCAGAACAGCCGATGATGTAATAGATGCTGTTGTTGTTGATGAAGAGGCCGTTGGAAGTGAGGGGTGCCTGAGAGGGGCTAAAATTCTTTATGGTAAGGGTGCATTGGATCGTTATCTTTCTGAGCAGAAAAAAGATTCAGAGACCTCGGAAGCATCAGTTGGAGATCATGAAGCAGAGACAGAACTTCCTTCCATTGTTGCCAGCATGTAA 1677 0.4562 MAATAAFRSKPRSYKETATLALSQLRYFAFNYTPAANSQYPSRSTLINTPKPLFLRGDFTQRRSTLFDNRRGYNVVASSGEPPEVWSGGGIVVRSGNSNFDVPGGGGGGGGGGGAANSGDSGSSNSKDGCWGGSNFGANFPTPKEICNGLDKFVIGQERAKKVLSVAVYNHYKRIFHESSSNWPAGDSSDNGKAEAVDDDKVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQASYVGEDVESILYKLLVAADYNVAAAQHGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKNILFICGGAFIDLEKTISDRRQDSSIGFGAPVRANMRTGSVTDAAIASSLLGTVESSDLIAYGLIPEFVGRFPVLVSLSALTENQLIQVLTEPKNALGKQYKKMFQMNGVKLHFTENALRSIAKKAISKNTGARGLRSILESVLVDAMYEIPDTRTADDVIDAVVVDEEAVGSEGCLRGAKILYGKGALDRYLSEQKKDSETSEASVGDHEAETELPSIVASM* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02111 558 CDD RecA-like_ClpX 141 413 - -
Rops10g02111 558 MobiDBLite consensus disorder prediction 532 546 - -
Rops10g02111 558 SMART ClpB_D2_small_2 416 512 IPR019489 -
Rops10g02111 558 Pfam C-terminal, D2-small domain, of ClpB protein 416 487 IPR019489 -
Rops10g02111 558 Gene3D - 135 414 IPR027417 -
Rops10g02111 558 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 120 533 - -
Rops10g02111 558 MobiDBLite consensus disorder prediction 532 558 - -
Rops10g02111 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 502 IPR027417 -
Rops10g02111 558 SMART AAA_5 205 363 IPR003593 GO:0016887
Rops10g02111 558 Gene3D - 415 515 - -
Rops10g02111 558 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 134 414 - -
Rops10g02111 558 Pfam AAA domain (Cdc48 subfamily) 205 409 IPR003959 GO:0005524|GO:0016887
Rops10g02111 558 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 139 505 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Rops10g02111 558 MobiDBLite consensus disorder prediction 97 126 - -
Rops10g02111 558 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 415 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02111 Rops-Chr10 38342943 38348997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02111 209 308 Miscellaneous Gene Families AT3G02450 35.644 7.10e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02111 K03544 - gmx:100810042 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02111 10 38342943 38348997 Rops10g02111 10 38342943 38348997 ECH