Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02060 ATGGGAGTTGTGACTGTTTCTAGCTCAGCTGCAAGGACTCCACTAGGATTGAATTCAAAGTTTTACAGACATCGTTCTGCACTGAAGAGACCTTTAACGGTAGCATTTAAAGGAGATAAATCAAATGACACAGCTTTGGTTGCAACTCAAGAGAATATTCCTATGGCCATTGAACCGGCCAAGACGCAAAAGAAAAGGGTAGGGAAAACTAATAAACCTCCTAAGAGAGTAAGAGGTGTCTCCACCGAGGAAACTTCTCCATCTTCCTTGGATTTGGACTACAGCGAAGCTGCTGCCATACTAGAAAATATATACAAACTCAGCCCTGCATCTGATACCTGTAATGCAGAATATGTAGATAGTAAGATCAGGAGAGTCTCTCGTAGGAGGCAAAAGATTGGTGATGAAAGCAGTGAAAAGGAGTTAATAACTGATAGGGTGGTCAGAAACCAAAACAGGAAACCCAAACGGTTGAGTCTTGAAAAGAGGATTGCATTGAAAAAGAACCAAAAAGGGGAGGTAGCCATTCCAACTCAAAAGAAAAGAAAGGTTAAGAATAGAATTGAGAAGATTGAGGAACTTGTTAGGGAGTATTCAGCATCATCTGATTTTGTCAGTCTGGACTGGAAAAGAATGAAAATACCTCCAGTCCTTCCTTATTCAGAGCATGCTTGGTTGTTCAAGTTGATGCAACCTATGAAGGCACTACTTGGAGTCAAGGAAGGTCTACAGAAGGAGCTGGGGAGAGAACCTACAGAAGGTGAAATAGCTGATGCAACAAACATTAGCACTGCTCGAGTAAAGAAAGCTATGGAGGTTGGTCAAGCTGCAAGAAACAAGCTCATAAAGCACAATCTCCGGCTTGTCTTGTTTGTGATCAACAAATACTTTCCAGATTTGGGTAGTGGCCCGAGGTTTCAAGATCTTTGCCAGGCAGGTGTTAAGGGACTCATAACAGCAATTGATCGTTTTGAGCCAAACAGGAGATTTCGGCTATCTACATACAGTTTATTTTGGATAAGACACTCTATCATTCGTTCCATGACCCTCTCAAGCTTCACACGTGTTCCCTTTGGACTTGAATCGGTCAGGGCAGAGATTCGAAGAGCTATGACTGAATTAACAATTGAGCTTCAGAGGCCACCAACAGTGGAAGAAATAATAGAAAGAGTTCAGATATCCCCTGAAAGATACCATGACGTAATGAAGGCATCAAAACCCATTCTTTCGCTTAACTCGAGGCATATAACCACACAAGATGAGTTTATTAATGGGGTCATTGATGAGGGTGGTGCTAATGGTGATAATAGTAGGCAACCTGCTCTTCTAAGGCTTGCTCTTGATGATGTGCTTGATTCCCTGAAGCCCAAGGAGAGCTTGGTGATCAGACAAAGATTTGGACTTGATGGTAAGGGTGACAGAACATTGGGAGAAATTGCTGGGAACTTGAATATTTCAAGGGAAATGGTAAGAAAGTACGAAGTGAAGGCTCTCATGAAGCTCAAGCATTCAGCTCGATTGGATTATCTTCGTCGTTATGTTGAATAA 1548 0.4205 MGVVTVSSSAARTPLGLNSKFYRHRSALKRPLTVAFKGDKSNDTALVATQENIPMAIEPAKTQKKRVGKTNKPPKRVRGVSTEETSPSSLDLDYSEAAAILENIYKLSPASDTCNAEYVDSKIRRVSRRRQKIGDESSEKELITDRVVRNQNRKPKRLSLEKRIALKKNQKGEVAIPTQKKRKVKNRIEKIEELVREYSASSDFVSLDWKRMKIPPVLPYSEHAWLFKLMQPMKALLGVKEGLQKELGREPTEGEIADATNISTARVKKAMEVGQAARNKLIKHNLRLVLFVINKYFPDLGSGPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHSIIRSMTLSSFTRVPFGLESVRAEIRRAMTELTIELQRPPTVEEIIERVQISPERYHDVMKASKPILSLNSRHITTQDEFINGVIDEGGANGDNSRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKYEVKALMKLKHSARLDYLRRYVE* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02060 515 CDD Sigma70_r4 444 502 - -
Rops10g02060 515 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 199 348 IPR013325 GO:0003700|GO:0006352|GO:0006355
Rops10g02060 515 Pfam Sigma-70, region 4 450 503 IPR007630 GO:0003700|GO:0006352|GO:0006355
Rops10g02060 515 Gene3D - 271 349 - -
Rops10g02060 515 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 356 423 IPR013324 -
Rops10g02060 515 NCBIfam sigma-70 family RNA polymerase sigma factor 277 503 IPR014284 GO:0003700|GO:0006352|GO:0006355
Rops10g02060 515 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 91 514 - -
Rops10g02060 515 Pfam Sigma-70 region 3 239 276 IPR007624 GO:0003700|GO:0006352|GO:0006355
Rops10g02060 515 Pfam Sigma-70 region 3 365 430 IPR007624 GO:0003700|GO:0006352|GO:0006355
Rops10g02060 515 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 441 513 IPR013324 -
Rops10g02060 515 PRINTS Major sigma-70 factor signature 454 466 IPR000943 GO:0003700|GO:0006352|GO:0006355
Rops10g02060 515 PRINTS Major sigma-70 factor signature 332 340 IPR000943 GO:0003700|GO:0006352|GO:0006355
Rops10g02060 515 PRINTS Major sigma-70 factor signature 475 490 IPR000943 GO:0003700|GO:0006352|GO:0006355
Rops10g02060 515 PRINTS Major sigma-70 factor signature 490 501 IPR000943 GO:0003700|GO:0006352|GO:0006355
Rops10g02060 515 PRINTS Major sigma-70 factor signature 308 321 IPR000943 GO:0003700|GO:0006352|GO:0006355
Rops10g02060 515 Pfam Sigma-70 region 2 281 347 IPR007627 GO:0003700|GO:0006352|GO:0006355
Rops10g02060 515 Coils Coil 181 201 - -
Rops10g02060 515 Gene3D - 438 515 IPR036388 -
Rops10g02060 515 Gene3D - 228 270 IPR036388 -
Rops10g02060 515 Gene3D - 354 406 IPR036388 -
Rops10g02060 515 MobiDBLite consensus disorder prediction 61 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02060 Rops-Chr10 37459689 37463882 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02060 K03093 - gmx:100812580 785.408